miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 171 0.68 0.450889
Target:  5'- -cCGcGCGCcgcgGGGCuGCCUUCCcGCGGGc -3'
miRNA:   3'- gaGC-CGCGa---CCUG-CGGGAGGcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 1143 0.66 0.530907
Target:  5'- cCUCGGCgGCgUGGccaGCCC-CgCGGCGGu -3'
miRNA:   3'- -GAGCCG-CG-ACCug-CGGGaG-GCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 2080 0.67 0.499976
Target:  5'- gCUCGGCGgaccacuccgggGGGgGCCCgcccCCGGCGcGGc -3'
miRNA:   3'- -GAGCCGCga----------CCUgCGGGa---GGCCGC-CC- -5'
5169 3' -64.8 NC_001798.1 + 2248 0.66 0.577556
Target:  5'- --aGGCgGC-GGGCGCgCCgCCGGgGGGc -3'
miRNA:   3'- gagCCG-CGaCCUGCG-GGaGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 2368 0.66 0.577556
Target:  5'- gCUCGGCcacggcccGCgGGGCGCaguaggCCUCCagGGCGGcGg -3'
miRNA:   3'- -GAGCCG--------CGaCCUGCG------GGAGG--CCGCC-C- -5'
5169 3' -64.8 NC_001798.1 + 2440 0.67 0.47424
Target:  5'- -cCGGCgGCUGGcggcgccagcCGCCCUgcgggucggggcccUCGGCGGGc -3'
miRNA:   3'- gaGCCG-CGACCu---------GCGGGA--------------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 2610 0.74 0.178524
Target:  5'- --gGGCGCgGGGCGCCgC-CCGGCGGc -3'
miRNA:   3'- gagCCGCGaCCUGCGG-GaGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 2972 0.69 0.377944
Target:  5'- gUCGGCGUgcggcgGGGCGgCCggCCcGCGGGc -3'
miRNA:   3'- gAGCCGCGa-----CCUGCgGGa-GGcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 3221 0.67 0.512621
Target:  5'- -gCGGCGCUcaGGCGCCC-CagGGCGGc -3'
miRNA:   3'- gaGCCGCGAc-CUGCGGGaGg-CCGCCc -5'
5169 3' -64.8 NC_001798.1 + 4109 0.66 0.55876
Target:  5'- gCUCGGCcCUGGGCggGCUCggCCGGggcgccgccccCGGGg -3'
miRNA:   3'- -GAGCCGcGACCUG--CGGGa-GGCC-----------GCCC- -5'
5169 3' -64.8 NC_001798.1 + 4362 0.7 0.355453
Target:  5'- -cCGGCGggGGGCGCgCCggCGGCGGu -3'
miRNA:   3'- gaGCCGCgaCCUGCG-GGagGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 4563 0.67 0.476872
Target:  5'- aUCGGCGCgcauggaGGGgGUCCg-CGGCGGa -3'
miRNA:   3'- gAGCCGCGa------CCUgCGGGagGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 4615 0.66 0.577556
Target:  5'- uCUUGcGCGCcGu-CGCgCUCCGGgGGGg -3'
miRNA:   3'- -GAGC-CGCGaCcuGCGgGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 5721 0.67 0.494599
Target:  5'- -gCGaGCGCUGG-CGCCCUgcCCGG-GGc -3'
miRNA:   3'- gaGC-CGCGACCuGCGGGA--GGCCgCCc -5'
5169 3' -64.8 NC_001798.1 + 8828 0.67 0.485697
Target:  5'- ---cGCGCUGGaACGCaCCgagucuuggUCGGCGGGc -3'
miRNA:   3'- gagcCGCGACC-UGCG-GGa--------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 9152 0.68 0.450889
Target:  5'- --gGGCGCgGcGcCGCCCgcgCCGGgGGGc -3'
miRNA:   3'- gagCCGCGaC-CuGCGGGa--GGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 9675 0.68 0.450889
Target:  5'- --gGGCGCgggaugGGGgGCUCUCaCGuGCGGGc -3'
miRNA:   3'- gagCCGCGa-----CCUgCGGGAG-GC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 11636 0.68 0.425702
Target:  5'- --gGGCGC-GGGCGUCCcugugUCCccgggGGCGGGg -3'
miRNA:   3'- gagCCGCGaCCUGCGGG-----AGG-----CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 12854 0.69 0.377944
Target:  5'- -gUGGCGUUGGugGUgucggacagCUCCGGCGGc -3'
miRNA:   3'- gaGCCGCGACCugCGg--------GAGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 15116 0.66 0.549425
Target:  5'- -gUGGCGCUGucguCGUCCUCgGG-GGGu -3'
miRNA:   3'- gaGCCGCGACcu--GCGGGAGgCCgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.