miRNA display CGI


Results 21 - 40 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 15386 0.7 0.333922
Target:  5'- -gCGGCGgaGG-CGCCCaCCGGaccCGGGg -3'
miRNA:   3'- gaGCCGCgaCCuGCGGGaGGCC---GCCC- -5'
5169 3' -64.8 NC_001798.1 + 18299 0.66 0.546634
Target:  5'- --aGGUGCUcgccgGGAagGCCggggccguguuuguCUCCGGCGGGa -3'
miRNA:   3'- gagCCGCGA-----CCUg-CGG--------------GAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 23534 0.68 0.407772
Target:  5'- cCUCGGCGC-GGACGacgaggaGGCGGGg -3'
miRNA:   3'- -GAGCCGCGaCCUGCgggagg-CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 23726 0.7 0.326271
Target:  5'- -cCGGCgggucgaGCUGGACGCcgacgcggCCUCCGGCGc- -3'
miRNA:   3'- gaGCCG-------CGACCUGCG--------GGAGGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 23848 0.68 0.456024
Target:  5'- -aCGGCggGCUGGGCGacagccgccccggCCUCUGGgGGGc -3'
miRNA:   3'- gaGCCG--CGACCUGCg------------GGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 24062 0.71 0.275157
Target:  5'- -gUGGCGCUGGACcagGCCUgcuUCCGGaucuCGGGc -3'
miRNA:   3'- gaGCCGCGACCUG---CGGG---AGGCC----GCCC- -5'
5169 3' -64.8 NC_001798.1 + 25433 0.67 0.494599
Target:  5'- -cCGcGCGCUGcGcCGCCCcgccccCCGGCGGc -3'
miRNA:   3'- gaGC-CGCGAC-CuGCGGGa-----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 25742 0.72 0.24569
Target:  5'- uCUCGGCGCUGGGCGCgcagggcgugcugCUgcugUCCacGCGGGa -3'
miRNA:   3'- -GAGCCGCGACCUGCG-------------GG----AGGc-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 26187 0.75 0.151276
Target:  5'- -cCGGCGCUGGACGgCCgggCCGccgccucgggcGCGGGc -3'
miRNA:   3'- gaGCCGCGACCUGCgGGa--GGC-----------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 26328 0.69 0.39346
Target:  5'- -gUGGCGCUGGggcgcgACGCCgUgcgcggcggcCCGGCGGa -3'
miRNA:   3'- gaGCCGCGACC------UGCGGgA----------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 27204 0.66 0.530907
Target:  5'- --gGGCGggGGAaGCCC-CCggGGCGGGg -3'
miRNA:   3'- gagCCGCgaCCUgCGGGaGG--CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 27544 0.66 0.566259
Target:  5'- -gCGGCGCgcgGGgggaggggcgGCGCCCgcgggggagcggCCGGCuccGGGg -3'
miRNA:   3'- gaGCCGCGa--CC----------UGCGGGa-----------GGCCG---CCC- -5'
5169 3' -64.8 NC_001798.1 + 27944 0.66 0.568138
Target:  5'- -cCGGCGCcGGcCGCgCC-CCGGCGc- -3'
miRNA:   3'- gaGCCGCGaCCuGCG-GGaGGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 28100 0.66 0.540139
Target:  5'- -gCGGCGCUGGcugcuggUGCCC-CaGGCGGa -3'
miRNA:   3'- gaGCCGCGACCu------GCGGGaGgCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 28856 0.69 0.38565
Target:  5'- -cCGGCGa-GGGCGgCCUcggCCGGCGGa -3'
miRNA:   3'- gaGCCGCgaCCUGCgGGA---GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 28995 0.67 0.512621
Target:  5'- -gCGGCGCcGGccaaccGCGCgCCgCCGcGCGGGc -3'
miRNA:   3'- gaGCCGCGaCC------UGCG-GGaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 29413 0.66 0.521733
Target:  5'- --gGGCGCcggggGGACuCCCaucugcgUCGGCGGGg -3'
miRNA:   3'- gagCCGCGa----CCUGcGGGa------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 31339 0.7 0.348169
Target:  5'- -cCGGCGggGGGCGCgCgcaggCgCGGCGGGu -3'
miRNA:   3'- gaGCCGCgaCCUGCGgGa----G-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 32241 0.67 0.503575
Target:  5'- -gCGGgGCUGGugggagcgucGCGUCCgcgUCCGGCgcuGGGg -3'
miRNA:   3'- gaGCCgCGACC----------UGCGGG---AGGCCG---CCC- -5'
5169 3' -64.8 NC_001798.1 + 32774 0.67 0.512621
Target:  5'- uCUCGGgaGCagGGcGCGCCCgcgCCGGCcGGc -3'
miRNA:   3'- -GAGCCg-CGa-CC-UGCGGGa--GGCCGcCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.