miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 125254 0.69 0.377944
Target:  5'- gUUGGgGCacGGCGUCCUCCGGCGc- -3'
miRNA:   3'- gAGCCgCGacCUGCGGGAGGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 123948 0.68 0.417494
Target:  5'- --gGGC-CUGGugGCaCCUccCCGGCGGc -3'
miRNA:   3'- gagCCGcGACCugCG-GGA--GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 122084 0.73 0.205263
Target:  5'- -gCGGUGCUGGcGgGCCUggagccgcCCGGCGGGg -3'
miRNA:   3'- gaGCCGCGACC-UgCGGGa-------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 122010 0.72 0.269164
Target:  5'- cCUCGGgGCUccgccaGGGCGCCCUgguccaccaggCCGucaGCGGGg -3'
miRNA:   3'- -GAGCCgCGA------CCUGCGGGA-----------GGC---CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 121376 0.69 0.401371
Target:  5'- uUCGGCGUUuGcCGCCUacgugCCGGCGGa -3'
miRNA:   3'- gAGCCGCGAcCuGCGGGa----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 121280 0.72 0.269164
Target:  5'- cCUCGuGCGC-GGcCGCCCcgaCGGUGGGg -3'
miRNA:   3'- -GAGC-CGCGaCCuGCGGGag-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 119374 0.7 0.348169
Target:  5'- --aGGCGCUGGuCGCCUggCUGGCGc- -3'
miRNA:   3'- gagCCGCGACCuGCGGGa-GGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 117279 0.66 0.577556
Target:  5'- uCUgGGCcaGCUccaGGugGCCCgCCacgaaacgGGCGGGg -3'
miRNA:   3'- -GAgCCG--CGA---CCugCGGGaGG--------CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 117073 0.66 0.549425
Target:  5'- -gUGGUGCaGcACGCCCgcgagagCgCGGCGGGg -3'
miRNA:   3'- gaGCCGCGaCcUGCGGGa------G-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 116773 0.67 0.512621
Target:  5'- -aCGGCGCUGcugugcuccgcGGCGCCCgac-GCGGGc -3'
miRNA:   3'- gaGCCGCGAC-----------CUGCGGGaggcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 116243 0.68 0.450889
Target:  5'- -cCGGCGCUGcugcCGCCCcUCGuGUGGGa -3'
miRNA:   3'- gaGCCGCGACcu--GCGGGaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 115852 0.68 0.417494
Target:  5'- gCUCGGCGUUGGccgccACGCCauggcgCCGGCu-- -3'
miRNA:   3'- -GAGCCGCGACC-----UGCGGga----GGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 111529 0.7 0.313362
Target:  5'- aCUCGGCGUggGGcuccuccaGCGCCCggucgCCGGCGu- -3'
miRNA:   3'- -GAGCCGCGa-CC--------UGCGGGa----GGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 111308 0.67 0.507185
Target:  5'- -gUGGCGCUGGAUGUaCCgaCCGacgagccgcacgagcGCGGGg -3'
miRNA:   3'- gaGCCGCGACCUGCG-GGa-GGC---------------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 111149 0.67 0.502674
Target:  5'- gUCGGCccgcgcgucGCUccccaccGGcACGUCCUUgGGCGGGa -3'
miRNA:   3'- gAGCCG---------CGA-------CC-UGCGGGAGgCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 109672 0.67 0.503575
Target:  5'- -aCGGcCGUccuccGGGCGCCgUUCCuGGCGGGc -3'
miRNA:   3'- gaGCC-GCGa----CCUGCGG-GAGG-CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 109103 1.08 0.000639
Target:  5'- gCUCGGCGCUGGACGCCCUCCGGCGGGu -3'
miRNA:   3'- -GAGCCGCGACCUGCGGGAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 108933 0.68 0.450889
Target:  5'- aUCGaUGCgGGACaGCCCUCCGGCc-- -3'
miRNA:   3'- gAGCcGCGaCCUG-CGGGAGGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 106001 0.66 0.577556
Target:  5'- -cUGGgGaggggGGGuCGCUCUCUGGUGGGg -3'
miRNA:   3'- gaGCCgCga---CCU-GCGGGAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 104525 0.69 0.370342
Target:  5'- -gCGGCGCgguuGACGUCgUCgCGGUGGGc -3'
miRNA:   3'- gaGCCGCGac--CUGCGGgAG-GCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.