miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 154509 0.68 0.450889
Target:  5'- -cCGcGCGCcgcgGGGCuGCCUUCCcGCGGGc -3'
miRNA:   3'- gaGC-CGCGa---CCUG-CGGGAGGcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 154109 0.74 0.178524
Target:  5'- -cCGGCGCcggGGAC-CCCggCGGCGGGg -3'
miRNA:   3'- gaGCCGCGa--CCUGcGGGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 153774 0.67 0.503575
Target:  5'- --gGGCGCUGcGGCccGCgCUCCuugcgcggcggcGGCGGGg -3'
miRNA:   3'- gagCCGCGAC-CUG--CGgGAGG------------CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 153001 0.66 0.540139
Target:  5'- -cCGGCGCgGGGCGgUCgCCGGgGcGGa -3'
miRNA:   3'- gaGCCGCGaCCUGCgGGaGGCCgC-CC- -5'
5169 3' -64.8 NC_001798.1 + 151581 0.68 0.459465
Target:  5'- gUCGGCggGCgugGGGCuGCCCUggcgcUCGGcCGGGg -3'
miRNA:   3'- gAGCCG--CGa--CCUG-CGGGA-----GGCC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 151330 0.66 0.521733
Target:  5'- -aUGGUGCUGaACGaCCCgCUGGCGGu -3'
miRNA:   3'- gaGCCGCGACcUGC-GGGaGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 150910 0.71 0.306725
Target:  5'- ---cGCGCcgGGGCGCUCUUCGGgGGGc -3'
miRNA:   3'- gagcCGCGa-CCUGCGGGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 150838 0.68 0.417494
Target:  5'- --gGGCGCcaggGGGCGCCggucgggUCgCGGCGGGc -3'
miRNA:   3'- gagCCGCGa---CCUGCGGg------AG-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 150430 0.7 0.320107
Target:  5'- -gCGGCGCgGGGCGgaCUCCGgacgcGCGGGg -3'
miRNA:   3'- gaGCCGCGaCCUGCggGAGGC-----CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 147177 0.69 0.401371
Target:  5'- -cCGGCGCcGGGCGgaaggcguccCCCgcCCGGCGGu -3'
miRNA:   3'- gaGCCGCGaCCUGC----------GGGa-GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 143298 0.68 0.434005
Target:  5'- --aGGgGCcGucCGCCC-CCGGCGGGu -3'
miRNA:   3'- gagCCgCGaCcuGCGGGaGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 139342 0.7 0.313362
Target:  5'- -gCGcGCGCUGugcggccauGGCGgCgUCCGGCGGGg -3'
miRNA:   3'- gaGC-CGCGAC---------CUGCgGgAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 135751 0.71 0.287462
Target:  5'- ---cGCGCUGaGACGaauCCUCCGGCGGc -3'
miRNA:   3'- gagcCGCGAC-CUGCg--GGAGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 135514 0.68 0.434005
Target:  5'- -aCGGCGCgauccaGGACGCCCgCCGGgcccuCGaGGc -3'
miRNA:   3'- gaGCCGCGa-----CCUGCGGGaGGCC-----GC-CC- -5'
5169 3' -64.8 NC_001798.1 + 134751 0.77 0.121811
Target:  5'- -cCGGCGCUGGuCGCCCucuUCCGGCa-- -3'
miRNA:   3'- gaGCCGCGACCuGCGGG---AGGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 134266 0.7 0.340992
Target:  5'- -gCGGCcCUGGAgCGCCagacgggCCGGUGGGc -3'
miRNA:   3'- gaGCCGcGACCU-GCGGga-----GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 132203 0.72 0.24077
Target:  5'- uUCGGggaGCUGGaggcGCGCCUggCCGGCGGa -3'
miRNA:   3'- gAGCCg--CGACC----UGCGGGa-GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 131448 0.66 0.521733
Target:  5'- -cUGGCGC-GGAUGCUUuaCGGgGGGg -3'
miRNA:   3'- gaGCCGCGaCCUGCGGGagGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 129340 0.69 0.362845
Target:  5'- -aCGGcCGC-GGAgCGCCCgccgggcCUGGCGGGg -3'
miRNA:   3'- gaGCC-GCGaCCU-GCGGGa------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 128499 0.7 0.333922
Target:  5'- -cCuGCgGCUGGACGCCCagucgUCGGCGGu -3'
miRNA:   3'- gaGcCG-CGACCUGCGGGa----GGCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.