miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 57164 0.72 0.269164
Target:  5'- -cUGGCGCccgGGccgGCGCCCUCCGcccagaucacguGCGGGu -3'
miRNA:   3'- gaGCCGCGa--CC---UGCGGGAGGC------------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 122010 0.72 0.269164
Target:  5'- cCUCGGgGCUccgccaGGGCGCCCUgguccaccaggCCGucaGCGGGg -3'
miRNA:   3'- -GAGCCgCGA------CCUGCGGGA-----------GGC---CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 24062 0.71 0.275157
Target:  5'- -gUGGCGCUGGACcagGCCUgcuUCCGGaucuCGGGc -3'
miRNA:   3'- gaGCCGCGACCUG---CGGG---AGGCC----GCCC- -5'
5169 3' -64.8 NC_001798.1 + 135751 0.71 0.287462
Target:  5'- ---cGCGCUGaGACGaauCCUCCGGCGGc -3'
miRNA:   3'- gagcCGCGAC-CUGCg--GGAGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 97549 0.71 0.300196
Target:  5'- -gUGGCGCggGGACGCCCgcgagCgaGGaCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCUGCGGGa----Gg-CC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 150910 0.71 0.306725
Target:  5'- ---cGCGCcgGGGCGCUCUUCGGgGGGc -3'
miRNA:   3'- gagcCGCGa-CCUGCGGGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 78885 0.7 0.313362
Target:  5'- aCUCGGCGCcgcgucGACGCCCUgCGGaGGu -3'
miRNA:   3'- -GAGCCGCGac----CUGCGGGAgGCCgCCc -5'
5169 3' -64.8 NC_001798.1 + 111529 0.7 0.313362
Target:  5'- aCUCGGCGUggGGcuccuccaGCGCCCggucgCCGGCGu- -3'
miRNA:   3'- -GAGCCGCGa-CC--------UGCGGGa----GGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 139342 0.7 0.313362
Target:  5'- -gCGcGCGCUGugcggccauGGCGgCgUCCGGCGGGg -3'
miRNA:   3'- gaGC-CGCGAC---------CUGCgGgAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 150430 0.7 0.320107
Target:  5'- -gCGGCGCgGGGCGgaCUCCGgacgcGCGGGg -3'
miRNA:   3'- gaGCCGCGaCCUGCggGAGGC-----CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 23726 0.7 0.326271
Target:  5'- -cCGGCgggucgaGCUGGACGCcgacgcggCCUCCGGCGc- -3'
miRNA:   3'- gaGCCG-------CGACCUGCG--------GGAGGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 35403 0.7 0.326961
Target:  5'- -cCGGcCGCcGGAUGCCCgcgggggccuaaUgCGGCGGGa -3'
miRNA:   3'- gaGCC-GCGaCCUGCGGG------------AgGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 83857 0.7 0.333221
Target:  5'- -gCGGCGCUGGcgggcccgaggcgGCGaCCC-CCGGCccGGGc -3'
miRNA:   3'- gaGCCGCGACC-------------UGC-GGGaGGCCG--CCC- -5'
5169 3' -64.8 NC_001798.1 + 128499 0.7 0.333922
Target:  5'- -cCuGCgGCUGGACGCCCagucgUCGGCGGu -3'
miRNA:   3'- gaGcCG-CGACCUGCGGGa----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 15386 0.7 0.333922
Target:  5'- -gCGGCGgaGG-CGCCCaCCGGaccCGGGg -3'
miRNA:   3'- gaGCCGCgaCCuGCGGGaGGCC---GCCC- -5'
5169 3' -64.8 NC_001798.1 + 134266 0.7 0.340992
Target:  5'- -gCGGCcCUGGAgCGCCagacgggCCGGUGGGc -3'
miRNA:   3'- gaGCCGcGACCU-GCGGga-----GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 53518 0.7 0.348169
Target:  5'- -gCGGC-CUGGACaucCCCgacgacCCGGCGGGc -3'
miRNA:   3'- gaGCCGcGACCUGc--GGGa-----GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 31339 0.7 0.348169
Target:  5'- -cCGGCGggGGGCGCgCgcaggCgCGGCGGGu -3'
miRNA:   3'- gaGCCGCgaCCUGCGgGa----G-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 119374 0.7 0.348169
Target:  5'- --aGGCGCUGGuCGCCUggCUGGCGc- -3'
miRNA:   3'- gagCCGCGACCuGCGGGa-GGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 34877 0.7 0.348169
Target:  5'- -cCGGCGCcGGGCGgcuacccgggaCCC-CCGGcCGGGa -3'
miRNA:   3'- gaGCCGCGaCCUGC-----------GGGaGGCC-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.