miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 81422 0.66 0.549425
Target:  5'- -aCGGCcuggaggaGCUGG-CGUCCgacgacgCCGGCGGc -3'
miRNA:   3'- gaGCCG--------CGACCuGCGGGa------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 117073 0.66 0.549425
Target:  5'- -gUGGUGCaGcACGCCCgcgagagCgCGGCGGGg -3'
miRNA:   3'- gaGCCGCGaCcUGCGGGa------G-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 66834 0.66 0.549425
Target:  5'- -cCGGUGCcGG-CGCCCaggCCGGgguuucCGGGg -3'
miRNA:   3'- gaGCCGCGaCCuGCGGGa--GGCC------GCCC- -5'
5169 3' -64.8 NC_001798.1 + 18299 0.66 0.546634
Target:  5'- --aGGUGCUcgccgGGAagGCCggggccguguuuguCUCCGGCGGGa -3'
miRNA:   3'- gagCCGCGA-----CCUg-CGG--------------GAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 153001 0.66 0.540139
Target:  5'- -cCGGCGCgGGGCGgUCgCCGGgGcGGa -3'
miRNA:   3'- gaGCCGCGaCCUGCgGGaGGCCgC-CC- -5'
5169 3' -64.8 NC_001798.1 + 28100 0.66 0.540139
Target:  5'- -gCGGCGCUGGcugcuggUGCCC-CaGGCGGa -3'
miRNA:   3'- gaGCCGCGACCu------GCGGGaGgCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 56157 0.66 0.540139
Target:  5'- -gCGGCgGCUuauaACGCCCgggggaCGGCGGGg -3'
miRNA:   3'- gaGCCG-CGAcc--UGCGGGag----GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 1143 0.66 0.530907
Target:  5'- cCUCGGCgGCgUGGccaGCCC-CgCGGCGGu -3'
miRNA:   3'- -GAGCCG-CG-ACCug-CGGGaG-GCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 27204 0.66 0.530907
Target:  5'- --gGGCGggGGAaGCCC-CCggGGCGGGg -3'
miRNA:   3'- gagCCGCgaCCUgCGGGaGG--CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 69502 0.66 0.530907
Target:  5'- --gGGCGCaGGACGCgC-CgGaGCGGGg -3'
miRNA:   3'- gagCCGCGaCCUGCGgGaGgC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 77207 0.66 0.530907
Target:  5'- -gCGGCGacggUGGACGCgg-CCGuGCGGGc -3'
miRNA:   3'- gaGCCGCg---ACCUGCGggaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 59709 0.66 0.530907
Target:  5'- uUCgGGCGCUuGGugGCGUCgUCCG-CGGGg -3'
miRNA:   3'- gAG-CCGCGA-CC--UGCGGgAGGCcGCCC- -5'
5169 3' -64.8 NC_001798.1 + 29413 0.66 0.521733
Target:  5'- --gGGCGCcggggGGACuCCCaucugcgUCGGCGGGg -3'
miRNA:   3'- gagCCGCGa----CCUGcGGGa------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 60855 0.66 0.521733
Target:  5'- -gCGGCGacgGGaucGCGUCCUCCGaaGGGg -3'
miRNA:   3'- gaGCCGCga-CC---UGCGGGAGGCcgCCC- -5'
5169 3' -64.8 NC_001798.1 + 36833 0.66 0.521733
Target:  5'- gUCGGCGUggGGACcgGCUgUgUGGUGGGu -3'
miRNA:   3'- gAGCCGCGa-CCUG--CGGgAgGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 74079 0.66 0.521733
Target:  5'- -aCGGCGaggUGGGCuucuucggggaGCCCa-CGGCGGGg -3'
miRNA:   3'- gaGCCGCg--ACCUG-----------CGGGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 131448 0.66 0.521733
Target:  5'- -cUGGCGC-GGAUGCUUuaCGGgGGGg -3'
miRNA:   3'- gaGCCGCGaCCUGCGGGagGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 151330 0.66 0.521733
Target:  5'- -aUGGUGCUGaACGaCCCgCUGGCGGu -3'
miRNA:   3'- gaGCCGCGACcUGC-GGGaGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 39391 0.67 0.512621
Target:  5'- gUCGGCagaGGGCGCCuuucgCUCCGGgacCGGGg -3'
miRNA:   3'- gAGCCGcgaCCUGCGG-----GAGGCC---GCCC- -5'
5169 3' -64.8 NC_001798.1 + 116773 0.67 0.512621
Target:  5'- -aCGGCGCUGcugugcuccgcGGCGCCCgac-GCGGGc -3'
miRNA:   3'- gaGCCGCGAC-----------CUGCGGGaggcCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.