miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 34877 0.7 0.348169
Target:  5'- -cCGGCGCcGGGCGgcuacccgggaCCC-CCGGcCGGGa -3'
miRNA:   3'- gaGCCGCGaCCUGC-----------GGGaGGCC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 34984 0.75 0.162459
Target:  5'- --aGGUGCggGGGC-CCCUCCGGcCGGGg -3'
miRNA:   3'- gagCCGCGa-CCUGcGGGAGGCC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 35281 0.67 0.468127
Target:  5'- -gCGG-GCgGGGCucggGCUCUCCGGCGGc -3'
miRNA:   3'- gaGCCgCGaCCUG----CGGGAGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 35403 0.7 0.326961
Target:  5'- -cCGGcCGCcGGAUGCCCgcgggggccuaaUgCGGCGGGa -3'
miRNA:   3'- gaGCC-GCGaCCUGCGGG------------AgGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36398 0.72 0.263276
Target:  5'- -gCGGCGCcgGGGCcCCCcugCCGgGCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCUGcGGGa--GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36495 0.68 0.409383
Target:  5'- -cCGGCGCgacgcGGGCGgCCg--GGCGGGg -3'
miRNA:   3'- gaGCCGCGa----CCUGCgGGaggCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36521 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36563 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36605 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36833 0.66 0.521733
Target:  5'- gUCGGCGUggGGACcgGCUgUgUGGUGGGu -3'
miRNA:   3'- gAGCCGCGa-CCUG--CGGgAgGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 39339 0.69 0.37337
Target:  5'- -cCGcGCGCUcGGAuauggaucgcagaacCGCCCgaaCGGCGGGg -3'
miRNA:   3'- gaGC-CGCGA-CCU---------------GCGGGag-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 39391 0.67 0.512621
Target:  5'- gUCGGCagaGGGCGCCuuucgCUCCGGgacCGGGg -3'
miRNA:   3'- gAGCCGcgaCCUGCGG-----GAGGCC---GCCC- -5'
5169 3' -64.8 NC_001798.1 + 39554 0.66 0.557824
Target:  5'- -gUGGCGCcgGGGcCGUCCgUCCGcgccgacGCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCU-GCGGG-AGGC-------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 39874 0.67 0.494599
Target:  5'- uUCGGgGgUGccGGCGUCCUCgGgGCGGGc -3'
miRNA:   3'- gAGCCgCgAC--CUGCGGGAGgC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 40130 0.68 0.434005
Target:  5'- -cCGGgGCUGGGauggcgggUGUCCUCCGaGgGGGc -3'
miRNA:   3'- gaGCCgCGACCU--------GCGGGAGGC-CgCCC- -5'
5169 3' -64.8 NC_001798.1 + 41442 0.67 0.512621
Target:  5'- --gGGCGUgggGGGuccaUGCCCcgCCGGgGGGg -3'
miRNA:   3'- gagCCGCGa--CCU----GCGGGa-GGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 47672 0.68 0.417494
Target:  5'- -gCGGCGCUGGcccgaugcgcgcGCGCCCgaggGGCGaGGu -3'
miRNA:   3'- gaGCCGCGACC------------UGCGGGagg-CCGC-CC- -5'
5169 3' -64.8 NC_001798.1 + 47842 0.67 0.503575
Target:  5'- -gCGcGCGCUccuccaccccccGGGgGCCCcgugggcgCCGGCGGGc -3'
miRNA:   3'- gaGC-CGCGA------------CCUgCGGGa-------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 48105 0.67 0.476872
Target:  5'- -aCGGCGCcgUGGAC-CCC-CCGGguggcCGGGu -3'
miRNA:   3'- gaGCCGCG--ACCUGcGGGaGGCC-----GCCC- -5'
5169 3' -64.8 NC_001798.1 + 48162 0.68 0.442401
Target:  5'- gUCgGGCGcCUGGcggccacgcACGCCCggCUGGCGGcGg -3'
miRNA:   3'- gAG-CCGC-GACC---------UGCGGGa-GGCCGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.