miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 106001 0.66 0.577556
Target:  5'- -cUGGgGaggggGGGuCGCUCUCUGGUGGGg -3'
miRNA:   3'- gaGCCgCga---CCU-GCGGGAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 117279 0.66 0.577556
Target:  5'- uCUgGGCcaGCUccaGGugGCCCgCCacgaaacgGGCGGGg -3'
miRNA:   3'- -GAgCCG--CGA---CCugCGGGaGG--------CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 4615 0.66 0.577556
Target:  5'- uCUUGcGCGCcGu-CGCgCUCCGGgGGGg -3'
miRNA:   3'- -GAGC-CGCGaCcuGCGgGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 36521 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36563 0.66 0.5785
Target:  5'- --gGGCGCgcggcggccgggcggGGGCGCgCggcggCCGgGCGGGg -3'
miRNA:   3'- gagCCGCGa--------------CCUGCGgGa----GGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 73332 0.66 0.55876
Target:  5'- -cCGcGCGCcgucGACGCgC-CCGGCGGGc -3'
miRNA:   3'- gaGC-CGCGac--CUGCGgGaGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 102657 0.66 0.55876
Target:  5'- --aGGgGCcgGGGCGCCCgaugCCGaaaCGGGg -3'
miRNA:   3'- gagCCgCGa-CCUGCGGGa---GGCc--GCCC- -5'
5169 3' -64.8 NC_001798.1 + 77207 0.66 0.530907
Target:  5'- -gCGGCGacggUGGACGCgg-CCGuGCGGGc -3'
miRNA:   3'- gaGCCGCg---ACCUGCGggaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 59709 0.66 0.530907
Target:  5'- uUCgGGCGCUuGGugGCGUCgUCCG-CGGGg -3'
miRNA:   3'- gAG-CCGCGA-CC--UGCGGgAGGCcGCCC- -5'
5169 3' -64.8 NC_001798.1 + 56157 0.66 0.540139
Target:  5'- -gCGGCgGCUuauaACGCCCgggggaCGGCGGGg -3'
miRNA:   3'- gaGCCG-CGAcc--UGCGGGag----GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 28100 0.66 0.540139
Target:  5'- -gCGGCGCUGGcugcuggUGCCC-CaGGCGGa -3'
miRNA:   3'- gaGCCGCGACCu------GCGGGaGgCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 153001 0.66 0.540139
Target:  5'- -cCGGCGCgGGGCGgUCgCCGGgGcGGa -3'
miRNA:   3'- gaGCCGCGaCCUGCgGGaGGCCgC-CC- -5'
5169 3' -64.8 NC_001798.1 + 18299 0.66 0.546634
Target:  5'- --aGGUGCUcgccgGGAagGCCggggccguguuuguCUCCGGCGGGa -3'
miRNA:   3'- gagCCGCGA-----CCUg-CGG--------------GAGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 15116 0.66 0.549425
Target:  5'- -gUGGCGCUGucguCGUCCUCgGG-GGGu -3'
miRNA:   3'- gaGCCGCGACcu--GCGGGAGgCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 81422 0.66 0.549425
Target:  5'- -aCGGCcuggaggaGCUGG-CGUCCgacgacgCCGGCGGc -3'
miRNA:   3'- gaGCCG--------CGACCuGCGGGa------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 117073 0.66 0.549425
Target:  5'- -gUGGUGCaGcACGCCCgcgagagCgCGGCGGGg -3'
miRNA:   3'- gaGCCGCGaCcUGCGGGa------G-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 66834 0.66 0.549425
Target:  5'- -cCGGUGCcGG-CGCCCaggCCGGgguuucCGGGg -3'
miRNA:   3'- gaGCCGCGaCCuGCGGGa--GGCC------GCCC- -5'
5169 3' -64.8 NC_001798.1 + 39554 0.66 0.557824
Target:  5'- -gUGGCGCcgGGGcCGUCCgUCCGcgccgacGCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCU-GCGGG-AGGC-------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 4109 0.66 0.55876
Target:  5'- gCUCGGCcCUGGGCggGCUCggCCGGggcgccgccccCGGGg -3'
miRNA:   3'- -GAGCCGcGACCUG--CGGGa-GGCC-----------GCCC- -5'
5169 3' -64.8 NC_001798.1 + 80402 0.66 0.55876
Target:  5'- -gCGGCGgUGaGCGUCCUCgGGCGc- -3'
miRNA:   3'- gaGCCGCgACcUGCGGGAGgCCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.