miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 2080 0.67 0.499976
Target:  5'- gCUCGGCGgaccacuccgggGGGgGCCCgcccCCGGCGcGGc -3'
miRNA:   3'- -GAGCCGCga----------CCUgCGGGa---GGCCGC-CC- -5'
5169 3' -64.8 NC_001798.1 + 71218 0.67 0.494599
Target:  5'- -cCGGCcuGCUgcagcuaggGGAgcCGCCCUCCGcCGGGg -3'
miRNA:   3'- gaGCCG--CGA---------CCU--GCGGGAGGCcGCCC- -5'
5169 3' -64.8 NC_001798.1 + 53237 0.67 0.494599
Target:  5'- cCUCaGCGCggccgUGGGCGUCCUgCGGCa-- -3'
miRNA:   3'- -GAGcCGCG-----ACCUGCGGGAgGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 39874 0.67 0.494599
Target:  5'- uUCGGgGgUGccGGCGUCCUCgGgGCGGGc -3'
miRNA:   3'- gAGCCgCgAC--CUGCGGGAGgC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 25433 0.67 0.494599
Target:  5'- -cCGcGCGCUGcGcCGCCCcgccccCCGGCGGc -3'
miRNA:   3'- gaGC-CGCGAC-CuGCGGGa-----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 5721 0.67 0.494599
Target:  5'- -gCGaGCGCUGG-CGCCCUgcCCGG-GGc -3'
miRNA:   3'- gaGC-CGCGACCuGCGGGA--GGCCgCCc -5'
5169 3' -64.8 NC_001798.1 + 116773 0.67 0.512621
Target:  5'- -aCGGCGCUGcugugcuccgcGGCGCCCgac-GCGGGc -3'
miRNA:   3'- gaGCCGCGAC-----------CUGCGGGaggcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 73256 0.67 0.494599
Target:  5'- -cCGGgGacCUGGAgGCCCaagaugCCGGCGGu -3'
miRNA:   3'- gaGCCgC--GACCUgCGGGa-----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 8828 0.67 0.485697
Target:  5'- ---cGCGCUGGaACGCaCCgagucuuggUCGGCGGGc -3'
miRNA:   3'- gagcCGCGACC-UGCG-GGa--------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 47842 0.67 0.503575
Target:  5'- -gCGcGCGCUccuccaccccccGGGgGCCCcgugggcgCCGGCGGGc -3'
miRNA:   3'- gaGC-CGCGA------------CCUgCGGGa-------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 72574 0.67 0.503575
Target:  5'- -gCGcGCGCUGGucGCGuCCCUC--GCGGGg -3'
miRNA:   3'- gaGC-CGCGACC--UGC-GGGAGgcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 109672 0.67 0.503575
Target:  5'- -aCGGcCGUccuccGGGCGCCgUUCCuGGCGGGc -3'
miRNA:   3'- gaGCC-GCGa----CCUGCGG-GAGG-CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 153774 0.67 0.503575
Target:  5'- --gGGCGCUGcGGCccGCgCUCCuugcgcggcggcGGCGGGg -3'
miRNA:   3'- gagCCGCGAC-CUG--CGgGAGG------------CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 111308 0.67 0.507185
Target:  5'- -gUGGCGCUGGAUGUaCCgaCCGacgagccgcacgagcGCGGGg -3'
miRNA:   3'- gaGCCGCGACCUGCG-GGa-GGC---------------CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 3221 0.67 0.512621
Target:  5'- -gCGGCGCUcaGGCGCCC-CagGGCGGc -3'
miRNA:   3'- gaGCCGCGAc-CUGCGGGaGg-CCGCCc -5'
5169 3' -64.8 NC_001798.1 + 32774 0.67 0.512621
Target:  5'- uCUCGGgaGCagGGcGCGCCCgcgCCGGCcGGc -3'
miRNA:   3'- -GAGCCg-CGa-CC-UGCGGGa--GGCCGcCC- -5'
5169 3' -64.8 NC_001798.1 + 53432 0.67 0.512621
Target:  5'- gCUCGGCGaggUGGA-GCUgUCgGGCGGc -3'
miRNA:   3'- -GAGCCGCg--ACCUgCGGgAGgCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 28995 0.67 0.512621
Target:  5'- -gCGGCGCcGGccaaccGCGCgCCgCCGcGCGGGc -3'
miRNA:   3'- gaGCCGCGaCC------UGCG-GGaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 39391 0.67 0.512621
Target:  5'- gUCGGCagaGGGCGCCuuucgCUCCGGgacCGGGg -3'
miRNA:   3'- gAGCCGcgaCCUGCGG-----GAGGCC---GCCC- -5'
5169 3' -64.8 NC_001798.1 + 41442 0.67 0.512621
Target:  5'- --gGGCGUgggGGGuccaUGCCCcgCCGGgGGGg -3'
miRNA:   3'- gagCCGCGa--CCU----GCGGGa-GGCCgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.