miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 70324 0.66 0.903554
Target:  5'- gGCCCgGcGGAG-GCGCGGGCgu-GCUg -3'
miRNA:   3'- -UGGGgCuCCUCuCGUGCUUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 109138 1.1 0.002347
Target:  5'- uACCCCGAGGAGAGCACGAACUACGCCc -3'
miRNA:   3'- -UGGGGCUCCUCUCGUGCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 22396 0.66 0.897237
Target:  5'- aACCCCGGcGAGccggGGCGCG-GCgGCGUCg -3'
miRNA:   3'- -UGGGGCUcCUC----UCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 50088 0.66 0.897237
Target:  5'- cGCuCCUGcGGAG-GC-CGGGCUggugGCGCCg -3'
miRNA:   3'- -UG-GGGCuCCUCuCGuGCUUGA----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 71112 0.66 0.897237
Target:  5'- cCCCCGGGGAcgcugauggcgcGcGUGCGGACggACGCg -3'
miRNA:   3'- uGGGGCUCCU------------CuCGUGCUUGa-UGCGg -5'
5169 5' -56.6 NC_001798.1 + 121077 0.66 0.897237
Target:  5'- gGCCCCGAGGA---CGCGcAC-ACGCa -3'
miRNA:   3'- -UGGGGCUCCUcucGUGCuUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 90640 0.66 0.897237
Target:  5'- cGCCUCGAagugguccgcGGAGAuGcCGCGGAacgACGCCc -3'
miRNA:   3'- -UGGGGCU----------CCUCU-C-GUGCUUga-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 133595 0.66 0.899791
Target:  5'- uUCCCGGGGcGGGGCGCGuuaaaaaccucaccaAGCga-GCCa -3'
miRNA:   3'- uGGGGCUCC-UCUCGUGC---------------UUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 2596 0.66 0.903554
Target:  5'- gGCUCUucuucGGGGGGCGCGGG--GCGCCg -3'
miRNA:   3'- -UGGGGcu---CCUCUCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 27482 0.66 0.903554
Target:  5'- uGCCgCgCGGGGGcGGGCGCGGgaaaaaagccgcGCggggGCGCCc -3'
miRNA:   3'- -UGG-G-GCUCCU-CUCGUGCU------------UGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 32273 0.66 0.903554
Target:  5'- gGCgCUGGGGAGAGaCGagaaaccucccuCGGcccccgcgcuGCUGCGCCg -3'
miRNA:   3'- -UGgGGCUCCUCUC-GU------------GCU----------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 51094 0.66 0.912015
Target:  5'- gGCCgCgGGGGAGAugGCGAGCgaagagccgcccccGCGCCg -3'
miRNA:   3'- -UGG-GgCUCCUCUcgUGCUUGa-------------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 90386 0.66 0.903554
Target:  5'- aACgCCGucGGGGGGCGCGGuuggGCcgGCGCg -3'
miRNA:   3'- -UGgGGCu-CCUCUCGUGCU----UGa-UGCGg -5'
5169 5' -56.6 NC_001798.1 + 146753 0.66 0.903554
Target:  5'- aGCCgCC--GGAGAGCcCGAGCccCGCCc -3'
miRNA:   3'- -UGG-GGcuCCUCUCGuGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 26290 0.66 0.903554
Target:  5'- cGCgCUGGGGccuGGGCGCGccGCUGCgGCCc -3'
miRNA:   3'- -UGgGGCUCCu--CUCGUGCu-UGAUG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 28621 0.66 0.903554
Target:  5'- -gCCCGAcGGGGGuccugggcGCGCGAGCgg-GCCg -3'
miRNA:   3'- ugGGGCU-CCUCU--------CGUGCUUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 39271 0.66 0.909045
Target:  5'- cAUCCCGccaaAGGGGucuuGCAUGAccagggcACUGCGUCc -3'
miRNA:   3'- -UGGGGC----UCCUCu---CGUGCU-------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 23868 0.66 0.909644
Target:  5'- cGCCCCGGccucuGGGGGGCGCccgaGGCggaggagGCGCg -3'
miRNA:   3'- -UGGGGCU-----CCUCUCGUGc---UUGa------UGCGg -5'
5169 5' -56.6 NC_001798.1 + 27698 0.66 0.909644
Target:  5'- uCCCCGGGGgaaaagaggcGGGGCGgGAGuccccgucCUGcCGCCg -3'
miRNA:   3'- uGGGGCUCC----------UCUCGUgCUU--------GAU-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 45445 0.66 0.909644
Target:  5'- cCCCCGGGccuacGAGGGCACaAGCcccggagguUGCGUCg -3'
miRNA:   3'- uGGGGCUC-----CUCUCGUGcUUG---------AUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.