miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 130419 0.71 0.692652
Target:  5'- gGCGACgagcgccagggcgACGCGGacucCCGUCUGGGCCc -3'
miRNA:   3'- aUGUUG-------------UGCGUCgu--GGCAGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 115136 0.7 0.72385
Target:  5'- gACAACGCGCGuGCGCgCGgaUCUGGugGCCa -3'
miRNA:   3'- aUGUUGUGCGU-CGUG-GC--AGACC--UGGc -5'
5173 3' -55.6 NC_001798.1 + 153042 0.7 0.733764
Target:  5'- gGCGGCGCGCgguuggccGGCGCCGccccCUGGGgCGg -3'
miRNA:   3'- aUGUUGUGCG--------UCGUGGCa---GACCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 91080 0.7 0.733764
Target:  5'- aGgGGCGCGCcggaGGCgGCCGUCgUGGACCc -3'
miRNA:   3'- aUgUUGUGCG----UCG-UGGCAG-ACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 37208 0.7 0.733764
Target:  5'- aACGACggGCGCGGCGCCGgagcUUUGGcCCa -3'
miRNA:   3'- aUGUUG--UGCGUCGUGGC----AGACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 116451 0.7 0.733764
Target:  5'- gGCcGCAC-CGGCcgGCCGaCUGGACCGu -3'
miRNA:   3'- aUGuUGUGcGUCG--UGGCaGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 93440 0.7 0.733764
Target:  5'- gGCAcGCACGUGGCGgccaacCCGcagCUGGACCGc -3'
miRNA:   3'- aUGU-UGUGCGUCGU------GGCa--GACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 92107 0.7 0.743587
Target:  5'- gACGGCGgGCAGCAgCCGUC--GACCa -3'
miRNA:   3'- aUGUUGUgCGUCGU-GGCAGacCUGGc -5'
5173 3' -55.6 NC_001798.1 + 1342 0.7 0.743587
Target:  5'- cGCGGCccGCGCAGCuCCG-CcGGGCCGc -3'
miRNA:   3'- aUGUUG--UGCGUCGuGGCaGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 73318 0.69 0.760056
Target:  5'- cAgGACACGCAggcccgcGCGCCGUCgacgcgcccggcGGGCCGc -3'
miRNA:   3'- aUgUUGUGCGU-------CGUGGCAGa-----------CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 72808 0.69 0.762929
Target:  5'- gGCGcGCugGCGGCGCC-UCUcGGCCGg -3'
miRNA:   3'- aUGU-UGugCGUCGUGGcAGAcCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 84916 0.69 0.772428
Target:  5'- cGCGAgACGUAGCGCgCGUCUaGACUu -3'
miRNA:   3'- aUGUUgUGCGUCGUG-GCAGAcCUGGc -5'
5173 3' -55.6 NC_001798.1 + 24659 0.69 0.800127
Target:  5'- gGCGAcCugGCGGCcguGCCGgggCUGG-CCGg -3'
miRNA:   3'- aUGUU-GugCGUCG---UGGCa--GACCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 111132 0.68 0.809064
Target:  5'- cGCAGCAgGgCGGCGCUGUC-GGcCCGc -3'
miRNA:   3'- aUGUUGUgC-GUCGUGGCAGaCCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 77692 0.68 0.816968
Target:  5'- -cCAGCGCGCccggggcAGCAgCGagcgCUGGGCCGc -3'
miRNA:   3'- auGUUGUGCG-------UCGUgGCa---GACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 54715 0.68 0.817838
Target:  5'- cUACGACGCGguGCGgacCUGg--GGGCCGg -3'
miRNA:   3'- -AUGUUGUGCguCGU---GGCagaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 39086 0.68 0.823879
Target:  5'- cGCAGCACGCAGUcgcgcauggccuugGCUGUCgacgcGGcCCGc -3'
miRNA:   3'- aUGUUGUGCGUCG--------------UGGCAGa----CCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 25970 0.68 0.826441
Target:  5'- gGCGGCgcgggaccuGCGCcGCACCGUgCUGGccuCCGg -3'
miRNA:   3'- aUGUUG---------UGCGuCGUGGCA-GACCu--GGC- -5'
5173 3' -55.6 NC_001798.1 + 12724 0.68 0.826441
Target:  5'- gGCGugGUGCGGCGCgaCGUCcUGGAUCGa -3'
miRNA:   3'- aUGUugUGCGUCGUG--GCAG-ACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 4070 0.68 0.826441
Target:  5'- gGCGGCcCGCGGuCGCCGcgggggUCcGGGCCGg -3'
miRNA:   3'- aUGUUGuGCGUC-GUGGC------AGaCCUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.