miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 154050 0.67 0.851145
Target:  5'- -cCGGgGCGCGGCACgG-CUGGagcGCCGg -3'
miRNA:   3'- auGUUgUGCGUCGUGgCaGACC---UGGC- -5'
5173 3' -55.6 NC_001798.1 + 153042 0.7 0.733764
Target:  5'- gGCGGCGCGCgguuggccGGCGCCGccccCUGGGgCGg -3'
miRNA:   3'- aUGUUGUGCG--------UCGUGGCa---GACCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 149737 0.68 0.843102
Target:  5'- cGCGGCGCaGCAGCG-CGg--GGGCCGa -3'
miRNA:   3'- aUGUUGUG-CGUCGUgGCagaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 149482 0.73 0.534304
Target:  5'- cGCGGCcCGCAGCAgguccgccacguuccCCGUCUGGuCCa -3'
miRNA:   3'- aUGUUGuGCGUCGU---------------GGCAGACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 146463 0.72 0.601253
Target:  5'- cGCAGCcgaGCAGCGCCGcgggcUCcgGGGCCGg -3'
miRNA:   3'- aUGUUGug-CGUCGUGGC-----AGa-CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 144166 0.74 0.491148
Target:  5'- cGCGGCG-GCAGCACCucuucgGUCUGGcACCGa -3'
miRNA:   3'- aUGUUGUgCGUCGUGG------CAGACC-UGGC- -5'
5173 3' -55.6 NC_001798.1 + 143819 0.8 0.246845
Target:  5'- gGCGGCGCGCGGCcaGCCG-UUGGACCa -3'
miRNA:   3'- aUGUUGUGCGUCG--UGGCaGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 137226 0.66 0.894961
Target:  5'- gGCcAUGCGCAGCAgCGcCUGGuuGCUGa -3'
miRNA:   3'- aUGuUGUGCGUCGUgGCaGACC--UGGC- -5'
5173 3' -55.6 NC_001798.1 + 130419 0.71 0.692652
Target:  5'- gGCGACgagcgccagggcgACGCGGacucCCGUCUGGGCCc -3'
miRNA:   3'- aUGUUG-------------UGCGUCgu--GGCAGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 130285 0.67 0.888214
Target:  5'- cUGCGuACGCGUcgaAGCGCCGaaUGGGCgCGg -3'
miRNA:   3'- -AUGU-UGUGCG---UCGUGGCagACCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 125522 0.66 0.907753
Target:  5'- aGgGACGCGCAGCGCaucgccgccgagCGUCaGGcccGCCGa -3'
miRNA:   3'- aUgUUGUGCGUCGUG------------GCAGaCC---UGGC- -5'
5173 3' -55.6 NC_001798.1 + 120923 0.66 0.907753
Target:  5'- uUGCAGUugGCcugauugagaaAGCccauaAUCGUCUGGACCGc -3'
miRNA:   3'- -AUGUUGugCG-----------UCG-----UGGCAGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 116451 0.7 0.733764
Target:  5'- gGCcGCAC-CGGCcgGCCGaCUGGACCGu -3'
miRNA:   3'- aUGuUGUGcGUCG--UGGCaGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 116285 0.74 0.500821
Target:  5'- aUGCGACACGCGGC-CC---UGGACCGc -3'
miRNA:   3'- -AUGUUGUGCGUCGuGGcagACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 115136 0.7 0.72385
Target:  5'- gACAACGCGCGuGCGCgCGgaUCUGGugGCCa -3'
miRNA:   3'- aUGUUGUGCGU-CGUG-GC--AGACC--UGGc -5'
5173 3' -55.6 NC_001798.1 + 111132 0.68 0.809064
Target:  5'- cGCAGCAgGgCGGCGCUGUC-GGcCCGc -3'
miRNA:   3'- aUGUUGUgC-GUCGUGGCAGaCCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 109774 0.67 0.887527
Target:  5'- gACGuCGCGCGGCgacccacGCCGaUCUccGGGCCGc -3'
miRNA:   3'- aUGUuGUGCGUCG-------UGGC-AGA--CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 108665 0.67 0.881239
Target:  5'- gACGGCcgACGCAacGCGCCGcCcccgGGGCCGc -3'
miRNA:   3'- aUGUUG--UGCGU--CGUGGCaGa---CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 106942 1.06 0.004603
Target:  5'- cUACAACACGCAGCACCGUCUGGACCGc -3'
miRNA:   3'- -AUGUUGUGCGUCGUGGCAGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 106458 0.66 0.894961
Target:  5'- --gAACACGCAGaUGCaGUCUGGGCgGc -3'
miRNA:   3'- augUUGUGCGUC-GUGgCAGACCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.