Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5173 | 5' | -64.7 | NC_001798.1 | + | 146033 | 0.66 | 0.459287 |
Target: 5'- --aGGCgCGguGGGGGGC-GUGGUGGUGAa -3' miRNA: 3'- uagCCG-GC--CCCUCCGcCGCCACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 26877 | 0.66 | 0.486237 |
Target: 5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3' miRNA: 3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 26847 | 0.66 | 0.486237 |
Target: 5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3' miRNA: 3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 26817 | 0.66 | 0.486237 |
Target: 5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3' miRNA: 3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 128238 | 0.66 | 0.477168 |
Target: 5'- cGUCGuGUCGcuGGAGGCGGCcGGcaUGGUGGa -3' miRNA: 3'- -UAGC-CGGCc-CCUCCGCCG-CC--ACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 70320 | 0.66 | 0.477168 |
Target: 5'- gGUCGGcCCGGcGGAGGC-GCGG-GcGUGc -3' miRNA: 3'- -UAGCC-GGCC-CCUCCGcCGCCaC-CAUu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 24570 | 0.66 | 0.468183 |
Target: 5'- -gCGGCCGGcgcgcGGAGGCGGgcCGcGUGGc-- -3' miRNA: 3'- uaGCCGGCC-----CCUCCGCC--GC-CACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 29903 | 0.66 | 0.468183 |
Target: 5'- --gGGuuGGGGGuGGUcgcgGGCGGUGGg-- -3' miRNA: 3'- uagCCggCCCCU-CCG----CCGCCACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 31145 | 0.66 | 0.459287 |
Target: 5'- -cCGGCgCGGG--GGCGGCGGUGcGg-- -3' miRNA: 3'- uaGCCG-GCCCcuCCGCCGCCAC-Cauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 26966 | 0.66 | 0.486237 |
Target: 5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3' miRNA: 3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 26996 | 0.66 | 0.486237 |
Target: 5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3' miRNA: 3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 6403 | 0.66 | 0.486237 |
Target: 5'- --gGGCCGGGGGGaCGGgGGgacgGGg-- -3' miRNA: 3'- uagCCGGCCCCUCcGCCgCCa---CCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 88032 | 0.66 | 0.499068 |
Target: 5'- cUUGGCCGGGGAgggcagggccgcuggGGgGGCGGgcucguccccUGGg-- -3' miRNA: 3'- uAGCCGGCCCCU---------------CCgCCGCC----------ACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 73649 | 0.66 | 0.495386 |
Target: 5'- -aUGGgCGGGGGGGUucgGGCGGcGGa-- -3' miRNA: 3'- uaGCCgGCCCCUCCG---CCGCCaCCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 27308 | 0.66 | 0.495386 |
Target: 5'- cUCGGCgggauggaGGGGAGGgaGGgGGUGGc-- -3' miRNA: 3'- uAGCCGg-------CCCCUCCg-CCgCCACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 45914 | 0.66 | 0.486237 |
Target: 5'- aAUCGGCgGGucucgGGGGGUGGCGGUc---- -3' miRNA: 3'- -UAGCCGgCC-----CCUCCGCCGCCAccauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 16218 | 0.66 | 0.486237 |
Target: 5'- -aCGcGCCgccuguGGGGGGGCGGUGGggccgGGg-- -3' miRNA: 3'- uaGC-CGG------CCCCUCCGCCGCCa----CCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 90424 | 0.66 | 0.486237 |
Target: 5'- -gCGGCCGGGcuuGAGGCGGUaccagccgaaGGUGa--- -3' miRNA: 3'- uaGCCGGCCC---CUCCGCCG----------CCACcauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 56413 | 0.66 | 0.486237 |
Target: 5'- -gCGGCgGGGGcuGGUGGCugccGUGGUGc -3' miRNA: 3'- uaGCCGgCCCCu-CCGCCGc---CACCAUu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 34629 | 0.66 | 0.486237 |
Target: 5'- -gCGGCgGGGGGGGgGGgGGgaaauGUGAg -3' miRNA: 3'- uaGCCGgCCCCUCCgCCgCCac---CAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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