miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 148409 0.7 0.289858
Target:  5'- -gCGGgCGGGGugggcgccgGGGCGGgGGUGGg-- -3'
miRNA:   3'- uaGCCgGCCCC---------UCCGCCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 56181 0.7 0.289858
Target:  5'- -aCGG-CGGGGGGGUGG-GGUGGg-- -3'
miRNA:   3'- uaGCCgGCCCCUCCGCCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 26517 0.69 0.309785
Target:  5'- -cUGGCCGcGGcGGGCGGCGGcguggaggUGGUGGg -3'
miRNA:   3'- uaGCCGGC-CCcUCCGCCGCC--------ACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 3312 0.69 0.316655
Target:  5'- -aCGGCaaCGGGGcGGCGGCGGcGGc-- -3'
miRNA:   3'- uaGCCG--GCCCCuCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36551 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36509 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36593 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 27240 0.69 0.330738
Target:  5'- -gCGGCCgcgGGGGAGGCGGCcGcGGg-- -3'
miRNA:   3'- uaGCCGG---CCCCUCCGCCGcCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 154111 0.69 0.330738
Target:  5'- --gGcGCCGGGGAccccGGCGGCGG-GGa-- -3'
miRNA:   3'- uagC-CGGCCCCU----CCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36438 0.69 0.330738
Target:  5'- --gGGUCGGGGucGCGGCGG-GGa-- -3'
miRNA:   3'- uagCCGGCCCCucCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 153805 0.69 0.337951
Target:  5'- -gCGGCgGGGGgcAGGCGGCGGcaGGc-- -3'
miRNA:   3'- uaGCCGgCCCC--UCCGCCGCCa-CCauu -5'
5173 5' -64.7 NC_001798.1 + 36144 0.68 0.352717
Target:  5'- -cCGGUgGGGcGcGGCGGCGGUcggGGUGGg -3'
miRNA:   3'- uaGCCGgCCC-CuCCGCCGCCA---CCAUU- -5'
5173 5' -64.7 NC_001798.1 + 31335 0.68 0.367163
Target:  5'- -gCGGCCGGcGGGGggcgcgcgcaggcGCGGCgGGUGGg-- -3'
miRNA:   3'- uaGCCGGCC-CCUC-------------CGCCG-CCACCauu -5'
5173 5' -64.7 NC_001798.1 + 146110 0.68 0.367934
Target:  5'- --aGGaaGGGGGggugguggcGGCGGCGGUGGa-- -3'
miRNA:   3'- uagCCggCCCCU---------CCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 15372 0.68 0.367934
Target:  5'- aAUCGGCCGuGGGc-GCGGCGGaGGc-- -3'
miRNA:   3'- -UAGCCGGC-CCCucCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 101836 0.68 0.374927
Target:  5'- -gCGGCgGGGGGaggcgugggucccGGCGGCGGcGGa-- -3'
miRNA:   3'- uaGCCGgCCCCU-------------CCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 113637 0.68 0.37571
Target:  5'- -gCGGCCGGcgccgccaugugGGuGGCGGCGGcGGa-- -3'
miRNA:   3'- uaGCCGGCC------------CCuCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 86263 0.68 0.37571
Target:  5'- -aCGGCCGGGGgcgcGGGCgcaccGGCGG-GGa-- -3'
miRNA:   3'- uaGCCGGCCCC----UCCG-----CCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 151608 0.68 0.383596
Target:  5'- cUCGGCCGGGGgccGGGCcGGgGGcgUGGc-- -3'
miRNA:   3'- uAGCCGGCCCC---UCCG-CCgCC--ACCauu -5'
5173 5' -64.7 NC_001798.1 + 91261 0.68 0.383596
Target:  5'- uUCuGCCGGcGGcaAGGCGGCGGUgccgucugGGUGg -3'
miRNA:   3'- uAGcCGGCC-CC--UCCGCCGCCA--------CCAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.