miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 154111 0.69 0.330738
Target:  5'- --gGcGCCGGGGAccccGGCGGCGG-GGa-- -3'
miRNA:   3'- uagC-CGGCCCCU----CCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 153805 0.69 0.337951
Target:  5'- -gCGGCgGGGGgcAGGCGGCGGcaGGc-- -3'
miRNA:   3'- uaGCCGgCCCC--UCCGCCGCCa-CCauu -5'
5173 5' -64.7 NC_001798.1 + 151608 0.68 0.383596
Target:  5'- cUCGGCCGGGGgccGGGCcGGgGGcgUGGc-- -3'
miRNA:   3'- uAGCCGGCCCC---UCCG-CCgCC--ACCauu -5'
5173 5' -64.7 NC_001798.1 + 148409 0.7 0.289858
Target:  5'- -gCGGgCGGGGugggcgccgGGGCGGgGGUGGg-- -3'
miRNA:   3'- uaGCCgGCCCC---------UCCGCCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 148039 0.76 0.119979
Target:  5'- cGUgGGCgCGGGcGGGGgGGUGGUGGUAGu -3'
miRNA:   3'- -UAgCCG-GCCC-CUCCgCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 146110 0.68 0.367934
Target:  5'- --aGGaaGGGGGggugguggcGGCGGCGGUGGa-- -3'
miRNA:   3'- uagCCggCCCCU---------CCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 146033 0.66 0.459287
Target:  5'- --aGGCgCGguGGGGGGC-GUGGUGGUGAa -3'
miRNA:   3'- uagCCG-GC--CCCUCCGcCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 145832 0.7 0.264872
Target:  5'- -gCGGUCGGGGugGGaGUGGUGGUGGg-- -3'
miRNA:   3'- uaGCCGGCCCC--UC-CGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 128238 0.66 0.477168
Target:  5'- cGUCGuGUCGcuGGAGGCGGCcGGcaUGGUGGa -3'
miRNA:   3'- -UAGC-CGGCc-CCUCCGCCG-CC--ACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 122831 0.74 0.146278
Target:  5'- -gCGGUCGGGGGcGGCGGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCCCCU-CCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 115752 0.67 0.449605
Target:  5'- -cCGGCCGGuccGGGGGCauccaggccaccuGGCGcGUGGUc- -3'
miRNA:   3'- uaGCCGGCC---CCUCCG-------------CCGC-CACCAuu -5'
5173 5' -64.7 NC_001798.1 + 113637 0.68 0.37571
Target:  5'- -gCGGCCGGcgccgccaugugGGuGGCGGCGGcGGa-- -3'
miRNA:   3'- uaGCCGGCC------------CCuCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 110319 0.7 0.264872
Target:  5'- -cCGGCCGGGGAGGUcaugucGGUgcugcuGGUGGa-- -3'
miRNA:   3'- uaGCCGGCCCCUCCG------CCG------CCACCauu -5'
5173 5' -64.7 NC_001798.1 + 106977 1.03 0.001117
Target:  5'- uAUCGGCCGGGGAGGCGGCGGUGGUAAu -3'
miRNA:   3'- -UAGCCGGCCCCUCCGCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 102037 0.71 0.238329
Target:  5'- gGUUGGgCGGGGGucuccgugucugcguGGgGGUGGUGGUAGg -3'
miRNA:   3'- -UAGCCgGCCCCU---------------CCgCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 101836 0.68 0.374927
Target:  5'- -gCGGCgGGGGGaggcgugggucccGGCGGCGGcGGa-- -3'
miRNA:   3'- uaGCCGgCCCCU-------------CCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 97469 0.67 0.424634
Target:  5'- -gCGGCUGGGGGccGGCGGCGcGaccgGGg-- -3'
miRNA:   3'- uaGCCGGCCCCU--CCGCCGC-Ca---CCauu -5'
5173 5' -64.7 NC_001798.1 + 96676 0.71 0.249586
Target:  5'- -aCGGCCGcgcuggagcgcguccGGGAguuuaugguGGCGGCGGUGGg-- -3'
miRNA:   3'- uaGCCGGC---------------CCCU---------CCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 91261 0.68 0.383596
Target:  5'- uUCuGCCGGcGGcaAGGCGGCGGUgccgucugGGUGg -3'
miRNA:   3'- uAGcCGGCC-CC--UCCGCCGCCA--------CCAUu -5'
5173 5' -64.7 NC_001798.1 + 90424 0.66 0.486237
Target:  5'- -gCGGCCGGGcuuGAGGCGGUaccagccgaaGGUGa--- -3'
miRNA:   3'- uaGCCGGCCC---CUCCGCCG----------CCACcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.