miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 27921 0.74 0.15276
Target:  5'- cCGGGGU--CCCCGCCgccggggUCCCGGCGCCGg -3'
miRNA:   3'- -GCUCCGcuGGGGCGG-------GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 22960 0.74 0.153121
Target:  5'- aCGAGGCGGCCCCGgCgUCCGGggagGCCGu -3'
miRNA:   3'- -GCUCCGCUGGGGCgGgGGGCUg---CGGU- -5'
5188 5' -66.8 NC_001798.1 + 34538 0.73 0.156772
Target:  5'- aCGcAGGCGcCCCCcCCCCCCGGaGCCu -3'
miRNA:   3'- -GC-UCCGCuGGGGcGGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 85230 0.73 0.164312
Target:  5'- gGAGaGCGACgucgcgCCCGCCCCCCcGCgGCCGc -3'
miRNA:   3'- gCUC-CGCUG------GGGCGGGGGGcUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 122371 0.73 0.164312
Target:  5'- -cGGGCGACgcgCCCGCCCCCCG-CGgCu -3'
miRNA:   3'- gcUCCGCUG---GGGCGGGGGGCuGCgGu -5'
5188 5' -66.8 NC_001798.1 + 33957 0.73 0.164312
Target:  5'- ---aGCGGCCCCGgCCCCCGGC-CCGu -3'
miRNA:   3'- gcucCGCUGGGGCgGGGGGCUGcGGU- -5'
5188 5' -66.8 NC_001798.1 + 1508 0.73 0.168203
Target:  5'- cCGAGGCGgcgGCCCgGCCgUCCaGCGCCGg -3'
miRNA:   3'- -GCUCCGC---UGGGgCGGgGGGcUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 128810 0.73 0.170577
Target:  5'- cCGAGccaaguacgcguuCGACCCCGCggaCCCCGGCGCCc -3'
miRNA:   3'- -GCUCc------------GCUGGGGCGg--GGGGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 81343 0.73 0.172176
Target:  5'- cCGGGG-GuCCUCGCCCCcacucuccucaCCGACGCCAc -3'
miRNA:   3'- -GCUCCgCuGGGGCGGGG-----------GGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 81940 0.73 0.172176
Target:  5'- gCGGGGCcuuUCCCGCCCCCaCGcucGCGCCc -3'
miRNA:   3'- -GCUCCGcu-GGGGCGGGGG-GC---UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 123390 0.73 0.172176
Target:  5'- -cAGGCGACgCCagGCCCCCCGGgaGCCGc -3'
miRNA:   3'- gcUCCGCUG-GGg-CGGGGGGCUg-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 29979 0.73 0.173788
Target:  5'- uCGGGG-GACCCCcgugggccgugcgccGCCCCCCGAC-CCu -3'
miRNA:   3'- -GCUCCgCUGGGG---------------CGGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 98650 0.73 0.175823
Target:  5'- uCGcGGCGAacgggggUCCCGCCUCCCGGcCGCCc -3'
miRNA:   3'- -GCuCCGCU-------GGGGCGGGGGGCU-GCGGu -5'
5188 5' -66.8 NC_001798.1 + 76605 0.73 0.176233
Target:  5'- gGGGGCGGgC-UGUCCCCCGAgGCCAc -3'
miRNA:   3'- gCUCCGCUgGgGCGGGGGGCUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 121412 0.73 0.179956
Target:  5'- gGGGGCGAuccuagcCCCCGUCaUCCCGGCGCa- -3'
miRNA:   3'- gCUCCGCU-------GGGGCGG-GGGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 27251 0.73 0.180374
Target:  5'- gGAGGCGGCCgcgggaCCGCagCCCCGugGCg- -3'
miRNA:   3'- gCUCCGCUGG------GGCGg-GGGGCugCGgu -5'
5188 5' -66.8 NC_001798.1 + 126284 0.73 0.180374
Target:  5'- ---aGCGGCCCCuCCCCCCGagacgGCGCCGu -3'
miRNA:   3'- gcucCGCUGGGGcGGGGGGC-----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 84205 0.73 0.180374
Target:  5'- cCGccGUGAUCgCGCCCCCCGggGCGCCGu -3'
miRNA:   3'- -GCucCGCUGGgGCGGGGGGC--UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 74981 0.72 0.184602
Target:  5'- aGAGGCccgcccccaaGGCCCCGCCCgCCaAgGCCAa -3'
miRNA:   3'- gCUCCG----------CUGGGGCGGGgGGcUgCGGU- -5'
5188 5' -66.8 NC_001798.1 + 419 0.72 0.184602
Target:  5'- uCGcGGCaGCCCCucCCCCCCGcGCGCCAc -3'
miRNA:   3'- -GCuCCGcUGGGGc-GGGGGGC-UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.