miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 3' -58.3 NC_001798.1 + 93052 1.08 0.002045
Target:  5'- uACGUUCACGGCCUUCGAGGCCAGCCAg -3'
miRNA:   3'- -UGCAAGUGCCGGAAGCUCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 2279 0.78 0.22824
Target:  5'- gGCGcagcgCGCGGCCagCGAGGCCAGCg- -3'
miRNA:   3'- -UGCaa---GUGCCGGaaGCUCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 4652 0.75 0.323879
Target:  5'- uCGUgcgaACGGCCUcguccaccaUCGAGGCCAGCa- -3'
miRNA:   3'- uGCAag--UGCCGGA---------AGCUCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 90415 0.74 0.361785
Target:  5'- cGCGUUCccGCGGCCgggcUUGAGGCgguacCAGCCGa -3'
miRNA:   3'- -UGCAAG--UGCCGGa---AGCUCCG-----GUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 4010 0.73 0.437412
Target:  5'- cCGUgaaGCGGCCcguggcgUCGcGGCCGGCCAc -3'
miRNA:   3'- uGCAag-UGCCGGa------AGCuCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 48353 0.72 0.492575
Target:  5'- cGCGacCGCGGCCgccCGGGGCC-GCCc -3'
miRNA:   3'- -UGCaaGUGCCGGaa-GCUCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 139572 0.71 0.502084
Target:  5'- gACGUg-GCGGCCUUgGAGGucccgaCCGGCCu -3'
miRNA:   3'- -UGCAagUGCCGGAAgCUCC------GGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 134617 0.71 0.519397
Target:  5'- gGCGccUUCGCGGaCCUggucgaggugugCGAGGUCGGCCu -3'
miRNA:   3'- -UGC--AAGUGCC-GGAa-----------GCUCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 135028 0.71 0.531069
Target:  5'- cGCGggCAUGGCCggccguggccUCGGaggcGGCCGGCCGc -3'
miRNA:   3'- -UGCaaGUGCCGGa---------AGCU----CCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 24659 0.71 0.531069
Target:  5'- gGCGaccUgGCGGCCgugcCGGGGCUGGCCGg -3'
miRNA:   3'- -UGCa--AgUGCCGGaa--GCUCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 93944 0.71 0.540868
Target:  5'- aGCGcgUCAUGGCCgagcUCGAGGCCcuGCa- -3'
miRNA:   3'- -UGCa-AGUGCCGGa---AGCUCCGGu-CGgu -5'
5193 3' -58.3 NC_001798.1 + 54683 0.71 0.550727
Target:  5'- cCGcUCGCGGCUcagcgCGAGGCC-GCCGg -3'
miRNA:   3'- uGCaAGUGCCGGaa---GCUCCGGuCGGU- -5'
5193 3' -58.3 NC_001798.1 + 102227 0.7 0.570601
Target:  5'- cCGggCGCGGC--UCGGGGCgGGCCu -3'
miRNA:   3'- uGCaaGUGCCGgaAGCUCCGgUCGGu -5'
5193 3' -58.3 NC_001798.1 + 140898 0.7 0.570601
Target:  5'- gACGUUU-CGGaCCUUCGAGGCUGuGCUg -3'
miRNA:   3'- -UGCAAGuGCC-GGAAGCUCCGGU-CGGu -5'
5193 3' -58.3 NC_001798.1 + 58849 0.7 0.580604
Target:  5'- cGCGUagGCGGCCc-CGAGcGCCAGgCAc -3'
miRNA:   3'- -UGCAagUGCCGGaaGCUC-CGGUCgGU- -5'
5193 3' -58.3 NC_001798.1 + 97458 0.7 0.580604
Target:  5'- cGCGUgcuggCGCGGCUg--GGGGCCGGCg- -3'
miRNA:   3'- -UGCAa----GUGCCGGaagCUCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 38794 0.7 0.590644
Target:  5'- cGCGcucgaCGCGGUUggCGAGGCgGGCCAg -3'
miRNA:   3'- -UGCaa---GUGCCGGaaGCUCCGgUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 51918 0.7 0.590644
Target:  5'- gGCGUU-GCGGCCcgUgGGGGCCGccGCCGu -3'
miRNA:   3'- -UGCAAgUGCCGGa-AgCUCCGGU--CGGU- -5'
5193 3' -58.3 NC_001798.1 + 154078 0.7 0.600714
Target:  5'- gGCGcggCACGGCUggagcgcCGGGGCgCGGCCGg -3'
miRNA:   3'- -UGCaa-GUGCCGGaa-----GCUCCG-GUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 115523 0.7 0.600714
Target:  5'- gGCGUacgUCGCGGCCcc---GGCCGGCCc -3'
miRNA:   3'- -UGCA---AGUGCCGGaagcuCCGGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.