miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 3' -58.3 NC_001798.1 + 1711 0.69 0.641146
Target:  5'- ----aCGCGGCCg--GAGGCCAGCaCGg -3'
miRNA:   3'- ugcaaGUGCCGGaagCUCCGGUCG-GU- -5'
5193 3' -58.3 NC_001798.1 + 2279 0.78 0.22824
Target:  5'- gGCGcagcgCGCGGCCagCGAGGCCAGCg- -3'
miRNA:   3'- -UGCaa---GUGCCGGaaGCUCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 2370 0.67 0.740572
Target:  5'- uCGgcCACGGCCcgCGGGGCgCAGUa- -3'
miRNA:   3'- uGCaaGUGCCGGaaGCUCCG-GUCGgu -5'
5193 3' -58.3 NC_001798.1 + 2424 0.66 0.820709
Target:  5'- gGCGUguggCugGGCCccggcggcuggCGGcGCCAGCCGc -3'
miRNA:   3'- -UGCAa---GugCCGGaa---------GCUcCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 2466 0.69 0.651256
Target:  5'- uGCGggUCGgGGCCcUCGgcGGGCCGGCgGg -3'
miRNA:   3'- -UGCa-AGUgCCGGaAGC--UCCGGUCGgU- -5'
5193 3' -58.3 NC_001798.1 + 4010 0.73 0.437412
Target:  5'- cCGUgaaGCGGCCcguggcgUCGcGGCCGGCCAc -3'
miRNA:   3'- uGCAag-UGCCGGa------AGCuCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 4652 0.75 0.323879
Target:  5'- uCGUgcgaACGGCCUcguccaccaUCGAGGCCAGCa- -3'
miRNA:   3'- uGCAag--UGCCGGA---------AGCUCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 17219 0.67 0.759629
Target:  5'- uUGUcgCACGGCCgccuUUCGGGGUCgcgcggGGCCGa -3'
miRNA:   3'- uGCAa-GUGCCGG----AAGCUCCGG------UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 18839 0.67 0.750151
Target:  5'- -gGUUCGCccGGCgaacCUUCGcAGGCUGGCCGa -3'
miRNA:   3'- ugCAAGUG--CCG----GAAGC-UCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 22120 0.69 0.661352
Target:  5'- gGCGaccUCGcCGGCCccUUUGGGGCCGGCgGg -3'
miRNA:   3'- -UGCa--AGU-GCCGG--AAGCUCCGGUCGgU- -5'
5193 3' -58.3 NC_001798.1 + 23796 0.66 0.830756
Target:  5'- aGCGgggagcCGUGGCC--CGGGGCCGGCCc -3'
miRNA:   3'- -UGCaa----GUGCCGGaaGCUCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 24200 0.68 0.721145
Target:  5'- cACGUg-GCGGCCgcCGuGGCCAugaGCCGc -3'
miRNA:   3'- -UGCAagUGCCGGaaGCuCCGGU---CGGU- -5'
5193 3' -58.3 NC_001798.1 + 24659 0.71 0.531069
Target:  5'- gGCGaccUgGCGGCCgugcCGGGGCUGGCCGg -3'
miRNA:   3'- -UGCa--AgUGCCGGaa--GCUCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 24836 0.68 0.701418
Target:  5'- cGCGUggccgGCGGCag-CGAGGCC-GCCGu -3'
miRNA:   3'- -UGCAag---UGCCGgaaGCUCCGGuCGGU- -5'
5193 3' -58.3 NC_001798.1 + 30386 0.69 0.651256
Target:  5'- cACGgaCACGGagaugUUCGAGGCgGGCCu -3'
miRNA:   3'- -UGCaaGUGCCgg---AAGCUCCGgUCGGu -5'
5193 3' -58.3 NC_001798.1 + 38794 0.7 0.590644
Target:  5'- cGCGcucgaCGCGGUUggCGAGGCgGGCCAg -3'
miRNA:   3'- -UGCaa---GUGCCGGaaGCUCCGgUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 47184 0.69 0.651256
Target:  5'- aGCGggCACuGGCCgcCG-GGUCAGCCu -3'
miRNA:   3'- -UGCaaGUG-CCGGaaGCuCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 48353 0.72 0.492575
Target:  5'- cGCGacCGCGGCCgccCGGGGCC-GCCc -3'
miRNA:   3'- -UGCaaGUGCCGGaa-GCUCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 51425 0.68 0.681464
Target:  5'- cACGaUgACGGCCc-CGGGGCgCGGCCu -3'
miRNA:   3'- -UGCaAgUGCCGGaaGCUCCG-GUCGGu -5'
5193 3' -58.3 NC_001798.1 + 51918 0.7 0.590644
Target:  5'- gGCGUU-GCGGCCcgUgGGGGCCGccGCCGu -3'
miRNA:   3'- -UGCAAgUGCCGGa-AgCUCCGGU--CGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.