Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5193 | 3' | -58.3 | NC_001798.1 | + | 60954 | 0.66 | 0.830756 |
Target: 5'- cGCGUcgugUCACcgGGCCcg-GAGGCgCGGCCGu -3' miRNA: 3'- -UGCA----AGUG--CCGGaagCUCCG-GUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 134149 | 0.66 | 0.787366 |
Target: 5'- gACG-UCuCGGCCccCGGGGCCgucgcGGCCGc -3' miRNA: 3'- -UGCaAGuGCCGGaaGCUCCGG-----UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 114768 | 0.66 | 0.787366 |
Target: 5'- gGCGgccaUCGCcgcgaGGCCaUCGAGGCCuGGCUc -3' miRNA: 3'- -UGCa---AGUG-----CCGGaAGCUCCGG-UCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 81529 | 0.66 | 0.79635 |
Target: 5'- uACGcacCGCGGCCcaUCG-GGCCGGCa- -3' miRNA: 3'- -UGCaa-GUGCCGGa-AGCuCCGGUCGgu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 121992 | 0.66 | 0.80519 |
Target: 5'- ----aCGCGGCCUccggcgucgccUCGGGGCUccGCCAg -3' miRNA: 3'- ugcaaGUGCCGGA-----------AGCUCCGGu-CGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 60346 | 0.66 | 0.817306 |
Target: 5'- gGCGUUCACcaccuucgugagcugGGgCUUCguGAGGCgCAGCUg -3' miRNA: 3'- -UGCAAGUG---------------CCgGAAG--CUCCG-GUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 2424 | 0.66 | 0.820709 |
Target: 5'- gGCGUguggCugGGCCccggcggcuggCGGcGCCAGCCGc -3' miRNA: 3'- -UGCAa---GugCCGGaa---------GCUcCGGUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 85255 | 0.66 | 0.822401 |
Target: 5'- ----cCGCGGCCgcgCGGGGCCGcGCgCGa -3' miRNA: 3'- ugcaaGUGCCGGaa-GCUCCGGU-CG-GU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 112240 | 0.66 | 0.830756 |
Target: 5'- gGCGacCauGCGGUCUUUGGGGCCuGUCc -3' miRNA: 3'- -UGCaaG--UGCCGGAAGCUCCGGuCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 23796 | 0.66 | 0.830756 |
Target: 5'- aGCGgggagcCGUGGCC--CGGGGCCGGCCc -3' miRNA: 3'- -UGCaa----GUGCCGGaaGCUCCGGUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 89011 | 0.66 | 0.830756 |
Target: 5'- aGCGgau-CuGCUUUCGcauGGCCAGCCAg -3' miRNA: 3'- -UGCaaguGcCGGAAGCu--CCGGUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 123901 | 0.67 | 0.778246 |
Target: 5'- cACGgaCACGGCCcccgaaucCGGGGCguGCUg -3' miRNA: 3'- -UGCaaGUGCCGGaa------GCUCCGguCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 78583 | 0.67 | 0.768997 |
Target: 5'- cGCGagCGCcgGGCCcagaUCGAGGCCgagggccuGGCCAa -3' miRNA: 3'- -UGCaaGUG--CCGGa---AGCUCCGG--------UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 96976 | 0.67 | 0.768997 |
Target: 5'- cGCGgacCGCGGCgggcggCGGGGCCAggGCCGg -3' miRNA: 3'- -UGCaa-GUGCCGgaa---GCUCCGGU--CGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 54542 | 0.67 | 0.766199 |
Target: 5'- cACGUcgaCGCGGCCgacCGGGgucccgagcccugcGCCGGCCGg -3' miRNA: 3'- -UGCAa--GUGCCGGaa-GCUC--------------CGGUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 76557 | 0.67 | 0.759629 |
Target: 5'- aGCGa-CGCGGCCUUCGucccGGCgacCGGCCc -3' miRNA: 3'- -UGCaaGUGCCGGAAGCu---CCG---GUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 76477 | 0.67 | 0.759629 |
Target: 5'- aGCaggCGCGGCgCagcUCGGGGCUGGCCGa -3' miRNA: 3'- -UGcaaGUGCCG-Ga--AGCUCCGGUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 73963 | 0.67 | 0.759629 |
Target: 5'- gACGcgCGCGGCCgcgggcUCcGGGCC-GCCGc -3' miRNA: 3'- -UGCaaGUGCCGGa-----AGcUCCGGuCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 17219 | 0.67 | 0.759629 |
Target: 5'- uUGUcgCACGGCCgccuUUCGGGGUCgcgcggGGCCGa -3' miRNA: 3'- uGCAa-GUGCCGG----AAGCUCCGG------UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 18839 | 0.67 | 0.750151 |
Target: 5'- -gGUUCGCccGGCgaacCUUCGcAGGCUGGCCGa -3' miRNA: 3'- ugCAAGUG--CCG----GAAGC-UCCGGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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