Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5193 | 3' | -58.3 | NC_001798.1 | + | 123901 | 0.67 | 0.778246 |
Target: 5'- cACGgaCACGGCCcccgaaucCGGGGCguGCUg -3' miRNA: 3'- -UGCaaGUGCCGGaa------GCUCCGguCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 76477 | 0.67 | 0.759629 |
Target: 5'- aGCaggCGCGGCgCagcUCGGGGCUGGCCGa -3' miRNA: 3'- -UGcaaGUGCCG-Ga--AGCUCCGGUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 24836 | 0.68 | 0.701418 |
Target: 5'- cGCGUggccgGCGGCag-CGAGGCC-GCCGu -3' miRNA: 3'- -UGCAag---UGCCGgaaGCUCCGGuCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 60160 | 0.68 | 0.671424 |
Target: 5'- gGCGUUgGCGGCCgcuu-GGCCcGCCu -3' miRNA: 3'- -UGCAAgUGCCGGaagcuCCGGuCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 121780 | 0.68 | 0.681464 |
Target: 5'- gGCGUcCuCGGUCUcgggCGGGGCCgGGCCGg -3' miRNA: 3'- -UGCAaGuGCCGGAa---GCUCCGG-UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 51425 | 0.68 | 0.681464 |
Target: 5'- cACGaUgACGGCCc-CGGGGCgCGGCCu -3' miRNA: 3'- -UGCaAgUGCCGGaaGCUCCG-GUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 68755 | 0.68 | 0.681464 |
Target: 5'- gAUGguaACGGCCgaaCGGGGCCuGCCc -3' miRNA: 3'- -UGCaagUGCCGGaa-GCUCCGGuCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 111012 | 0.68 | 0.701418 |
Target: 5'- uGCGUggcCGCGGCCaggCGuccguGGCCGGCg- -3' miRNA: 3'- -UGCAa--GUGCCGGaa-GCu----CCGGUCGgu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 146474 | 0.68 | 0.711314 |
Target: 5'- aGCGc-CGCGGgCUcCGGGGCCgGGCCGg -3' miRNA: 3'- -UGCaaGUGCCgGAaGCUCCGG-UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 24200 | 0.68 | 0.721145 |
Target: 5'- cACGUg-GCGGCCgcCGuGGCCAugaGCCGc -3' miRNA: 3'- -UGCAagUGCCGGaaGCuCCGGU---CGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 58903 | 0.68 | 0.721145 |
Target: 5'- gGCGcgC-CGGCCUcccCGAGGCUccacagGGCCAc -3' miRNA: 3'- -UGCaaGuGCCGGAa--GCUCCGG------UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 77856 | 0.68 | 0.721145 |
Target: 5'- gGCGcUCGCGGCCaacgcCGAGG-CGGUCAc -3' miRNA: 3'- -UGCaAGUGCCGGaa---GCUCCgGUCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 138739 | 0.68 | 0.721145 |
Target: 5'- cGCGcucCGCGGCCccggCGAccguGGCCAGCUg -3' miRNA: 3'- -UGCaa-GUGCCGGaa--GCU----CCGGUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 22120 | 0.69 | 0.661352 |
Target: 5'- gGCGaccUCGcCGGCCccUUUGGGGCCGGCgGg -3' miRNA: 3'- -UGCa--AGU-GCCGG--AAGCUCCGGUCGgU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 134257 | 0.69 | 0.661352 |
Target: 5'- uGCGUUCugGCGGCCcUgGAGcGCCagacgGGCCGg -3' miRNA: 3'- -UGCAAG--UGCCGGaAgCUC-CGG-----UCGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 94130 | 0.69 | 0.661352 |
Target: 5'- -aGUUCcgcgACGGUCUggcCGAGGCCAaccacGCCAu -3' miRNA: 3'- ugCAAG----UGCCGGAa--GCUCCGGU-----CGGU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 2466 | 0.69 | 0.651256 |
Target: 5'- uGCGggUCGgGGCCcUCGgcGGGCCGGCgGg -3' miRNA: 3'- -UGCa-AGUgCCGGaAGC--UCCGGUCGgU- -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 47184 | 0.69 | 0.651256 |
Target: 5'- aGCGggCACuGGCCgcCG-GGUCAGCCu -3' miRNA: 3'- -UGCaaGUG-CCGGaaGCuCCGGUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 30386 | 0.69 | 0.651256 |
Target: 5'- cACGgaCACGGagaugUUCGAGGCgGGCCu -3' miRNA: 3'- -UGCaaGUGCCgg---AAGCUCCGgUCGGu -5' |
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5193 | 3' | -58.3 | NC_001798.1 | + | 1711 | 0.69 | 0.641146 |
Target: 5'- ----aCGCGGCCg--GAGGCCAGCaCGg -3' miRNA: 3'- ugcaaGUGCCGGaagCUCCGGUCG-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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