miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 3' -58.3 NC_001798.1 + 134257 0.69 0.661352
Target:  5'- uGCGUUCugGCGGCCcUgGAGcGCCagacgGGCCGg -3'
miRNA:   3'- -UGCAAG--UGCCGGaAgCUC-CGG-----UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 73224 0.69 0.63103
Target:  5'- gGCGUUU-CGGCCUUCc--GCCGGCCc -3'
miRNA:   3'- -UGCAAGuGCCGGAAGcucCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 22120 0.69 0.661352
Target:  5'- gGCGaccUCGcCGGCCccUUUGGGGCCGGCgGg -3'
miRNA:   3'- -UGCa--AGU-GCCGG--AAGCUCCGGUCGgU- -5'
5193 3' -58.3 NC_001798.1 + 94130 0.69 0.661352
Target:  5'- -aGUUCcgcgACGGUCUggcCGAGGCCAaccacGCCAu -3'
miRNA:   3'- ugCAAG----UGCCGGAa--GCUCCGGU-----CGGU- -5'
5193 3' -58.3 NC_001798.1 + 2466 0.69 0.651256
Target:  5'- uGCGggUCGgGGCCcUCGgcGGGCCGGCgGg -3'
miRNA:   3'- -UGCa-AGUgCCGGaAGC--UCCGGUCGgU- -5'
5193 3' -58.3 NC_001798.1 + 47184 0.69 0.651256
Target:  5'- aGCGggCACuGGCCgcCG-GGUCAGCCu -3'
miRNA:   3'- -UGCaaGUG-CCGGaaGCuCCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 30386 0.69 0.651256
Target:  5'- cACGgaCACGGagaugUUCGAGGCgGGCCu -3'
miRNA:   3'- -UGCaaGUGCCgg---AAGCUCCGgUCGGu -5'
5193 3' -58.3 NC_001798.1 + 1711 0.69 0.641146
Target:  5'- ----aCGCGGCCg--GAGGCCAGCaCGg -3'
miRNA:   3'- ugcaaGUGCCGGaagCUCCGGUCG-GU- -5'
5193 3' -58.3 NC_001798.1 + 60160 0.68 0.671424
Target:  5'- gGCGUUgGCGGCCgcuu-GGCCcGCCu -3'
miRNA:   3'- -UGCAAgUGCCGGaagcuCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 121780 0.68 0.681464
Target:  5'- gGCGUcCuCGGUCUcgggCGGGGCCgGGCCGg -3'
miRNA:   3'- -UGCAaGuGCCGGAa---GCUCCGG-UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 51425 0.68 0.681464
Target:  5'- cACGaUgACGGCCc-CGGGGCgCGGCCu -3'
miRNA:   3'- -UGCaAgUGCCGGaaGCUCCG-GUCGGu -5'
5193 3' -58.3 NC_001798.1 + 68755 0.68 0.681464
Target:  5'- gAUGguaACGGCCgaaCGGGGCCuGCCc -3'
miRNA:   3'- -UGCaagUGCCGGaa-GCUCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 138739 0.68 0.721145
Target:  5'- cGCGcucCGCGGCCccggCGAccguGGCCAGCUg -3'
miRNA:   3'- -UGCaa-GUGCCGGaa--GCU----CCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 77856 0.68 0.721145
Target:  5'- gGCGcUCGCGGCCaacgcCGAGG-CGGUCAc -3'
miRNA:   3'- -UGCaAGUGCCGGaa---GCUCCgGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 58903 0.68 0.721145
Target:  5'- gGCGcgC-CGGCCUcccCGAGGCUccacagGGCCAc -3'
miRNA:   3'- -UGCaaGuGCCGGAa--GCUCCGG------UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 24200 0.68 0.721145
Target:  5'- cACGUg-GCGGCCgcCGuGGCCAugaGCCGc -3'
miRNA:   3'- -UGCAagUGCCGGaaGCuCCGGU---CGGU- -5'
5193 3' -58.3 NC_001798.1 + 146474 0.68 0.711314
Target:  5'- aGCGc-CGCGGgCUcCGGGGCCgGGCCGg -3'
miRNA:   3'- -UGCaaGUGCCgGAaGCUCCGG-UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 111012 0.68 0.701418
Target:  5'- uGCGUggcCGCGGCCaggCGuccguGGCCGGCg- -3'
miRNA:   3'- -UGCAa--GUGCCGGaa-GCu----CCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 24836 0.68 0.701418
Target:  5'- cGCGUggccgGCGGCag-CGAGGCC-GCCGu -3'
miRNA:   3'- -UGCAag---UGCCGgaaGCUCCGGuCGGU- -5'
5193 3' -58.3 NC_001798.1 + 54542 0.67 0.766199
Target:  5'- cACGUcgaCGCGGCCgacCGGGgucccgagcccugcGCCGGCCGg -3'
miRNA:   3'- -UGCAa--GUGCCGGaa-GCUC--------------CGGUCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.