miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 3' -58.3 NC_001798.1 + 94130 0.69 0.661352
Target:  5'- -aGUUCcgcgACGGUCUggcCGAGGCCAaccacGCCAu -3'
miRNA:   3'- ugCAAG----UGCCGGAa--GCUCCGGU-----CGGU- -5'
5193 3' -58.3 NC_001798.1 + 93944 0.71 0.540868
Target:  5'- aGCGcgUCAUGGCCgagcUCGAGGCCcuGCa- -3'
miRNA:   3'- -UGCa-AGUGCCGGa---AGCUCCGGu-CGgu -5'
5193 3' -58.3 NC_001798.1 + 93052 1.08 0.002045
Target:  5'- uACGUUCACGGCCUUCGAGGCCAGCCAg -3'
miRNA:   3'- -UGCAAGUGCCGGAAGCUCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 90415 0.74 0.361785
Target:  5'- cGCGUUCccGCGGCCgggcUUGAGGCgguacCAGCCGa -3'
miRNA:   3'- -UGCAAG--UGCCGGa---AGCUCCG-----GUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 89011 0.66 0.830756
Target:  5'- aGCGgau-CuGCUUUCGcauGGCCAGCCAg -3'
miRNA:   3'- -UGCaaguGcCGGAAGCu--CCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 85255 0.66 0.822401
Target:  5'- ----cCGCGGCCgcgCGGGGCCGcGCgCGa -3'
miRNA:   3'- ugcaaGUGCCGGaa-GCUCCGGU-CG-GU- -5'
5193 3' -58.3 NC_001798.1 + 81529 0.66 0.79635
Target:  5'- uACGcacCGCGGCCcaUCG-GGCCGGCa- -3'
miRNA:   3'- -UGCaa-GUGCCGGa-AGCuCCGGUCGgu -5'
5193 3' -58.3 NC_001798.1 + 78583 0.67 0.768997
Target:  5'- cGCGagCGCcgGGCCcagaUCGAGGCCgagggccuGGCCAa -3'
miRNA:   3'- -UGCaaGUG--CCGGa---AGCUCCGG--------UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 77856 0.68 0.721145
Target:  5'- gGCGcUCGCGGCCaacgcCGAGG-CGGUCAc -3'
miRNA:   3'- -UGCaAGUGCCGGaa---GCUCCgGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 76557 0.67 0.759629
Target:  5'- aGCGa-CGCGGCCUUCGucccGGCgacCGGCCc -3'
miRNA:   3'- -UGCaaGUGCCGGAAGCu---CCG---GUCGGu -5'
5193 3' -58.3 NC_001798.1 + 76477 0.67 0.759629
Target:  5'- aGCaggCGCGGCgCagcUCGGGGCUGGCCGa -3'
miRNA:   3'- -UGcaaGUGCCG-Ga--AGCUCCGGUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 73963 0.67 0.759629
Target:  5'- gACGcgCGCGGCCgcgggcUCcGGGCC-GCCGc -3'
miRNA:   3'- -UGCaaGUGCCGGa-----AGcUCCGGuCGGU- -5'
5193 3' -58.3 NC_001798.1 + 73224 0.69 0.63103
Target:  5'- gGCGUUU-CGGCCUUCc--GCCGGCCc -3'
miRNA:   3'- -UGCAAGuGCCGGAAGcucCGGUCGGu -5'
5193 3' -58.3 NC_001798.1 + 68755 0.68 0.681464
Target:  5'- gAUGguaACGGCCgaaCGGGGCCuGCCc -3'
miRNA:   3'- -UGCaagUGCCGGaa-GCUCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 60954 0.66 0.830756
Target:  5'- cGCGUcgugUCACcgGGCCcg-GAGGCgCGGCCGu -3'
miRNA:   3'- -UGCA----AGUG--CCGGaagCUCCG-GUCGGU- -5'
5193 3' -58.3 NC_001798.1 + 60346 0.66 0.817306
Target:  5'- gGCGUUCACcaccuucgugagcugGGgCUUCguGAGGCgCAGCUg -3'
miRNA:   3'- -UGCAAGUG---------------CCgGAAG--CUCCG-GUCGGu -5'
5193 3' -58.3 NC_001798.1 + 60160 0.68 0.671424
Target:  5'- gGCGUUgGCGGCCgcuu-GGCCcGCCu -3'
miRNA:   3'- -UGCAAgUGCCGGaagcuCCGGuCGGu -5'
5193 3' -58.3 NC_001798.1 + 58903 0.68 0.721145
Target:  5'- gGCGcgC-CGGCCUcccCGAGGCUccacagGGCCAc -3'
miRNA:   3'- -UGCaaGuGCCGGAa--GCUCCGG------UCGGU- -5'
5193 3' -58.3 NC_001798.1 + 58849 0.7 0.580604
Target:  5'- cGCGUagGCGGCCc-CGAGcGCCAGgCAc -3'
miRNA:   3'- -UGCAagUGCCGGaaGCUC-CGGUCgGU- -5'
5193 3' -58.3 NC_001798.1 + 54683 0.71 0.550727
Target:  5'- cCGcUCGCGGCUcagcgCGAGGCC-GCCGg -3'
miRNA:   3'- uGCaAGUGCCGGaa---GCUCCGGuCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.