miRNA display CGI


Results 61 - 80 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 26359 0.74 0.166431
Target:  5'- gCCCGGCGGagcuGCGCGgGCcGCGgCGGGa -3'
miRNA:   3'- -GGGUCGCCc---CGCGCgCGcUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 106085 0.74 0.170339
Target:  5'- gUCUGGCGGucgcggcgacccGGCGC-CGCGAcCGCCGGGu -3'
miRNA:   3'- -GGGUCGCC------------CCGCGcGCGCU-GCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 43021 0.74 0.170339
Target:  5'- gCCCGG-GGGGaGCGCGgGGCcCCGGGc -3'
miRNA:   3'- -GGGUCgCCCCgCGCGCgCUGcGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 34854 0.74 0.174328
Target:  5'- gCCgGGCGGGGgaCGCcuuccGCcCGGCGCCGGGc -3'
miRNA:   3'- -GGgUCGCCCC--GCG-----CGcGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3198 0.74 0.174328
Target:  5'- cCCCGgccggcGCGGaGGCGgGCGCGGCGCUcaggcgccccaGGGc -3'
miRNA:   3'- -GGGU------CGCC-CCGCgCGCGCUGCGG-----------CCC- -5'
5193 5' -66.4 NC_001798.1 + 24554 0.73 0.177169
Target:  5'- gCCGGCGGugguggcggcggccGGCGCGCggaggcgggccGCGugGCCGuGGa -3'
miRNA:   3'- gGGUCGCC--------------CCGCGCG-----------CGCugCGGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 79960 0.73 0.1784
Target:  5'- gUCCggAGCGGcGGCGC-CGCGuccgcCGCCGGGc -3'
miRNA:   3'- -GGG--UCGCC-CCGCGcGCGCu----GCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 3936 0.73 0.1784
Target:  5'- aCCCGucGCGGuaGCGCGCGUagaaGGCGCCGGa -3'
miRNA:   3'- -GGGU--CGCCc-CGCGCGCG----CUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 53124 0.73 0.182556
Target:  5'- uCCCuGCGGcuGGCGCgGUGCcuGACGCCGGc -3'
miRNA:   3'- -GGGuCGCC--CCGCG-CGCG--CUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 23828 0.73 0.182556
Target:  5'- gCCCc-CGGGGCGCGUGCuGuACGgCGGGc -3'
miRNA:   3'- -GGGucGCCCCGCGCGCG-C-UGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 31973 0.73 0.185516
Target:  5'- cCCCAGgGggugggggccaagaGGGCG-GCGCcGCGCCGGGc -3'
miRNA:   3'- -GGGUCgC--------------CCCGCgCGCGcUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2379 0.73 0.186798
Target:  5'- gCCC-GCGGGGCGCaguaggccuccaGgGCGGCGgCCGaGGg -3'
miRNA:   3'- -GGGuCGCCCCGCG------------CgCGCUGC-GGC-CC- -5'
5193 5' -66.4 NC_001798.1 + 115288 0.73 0.186798
Target:  5'- aCCCGGCcauGGaGCGCuucgcCGCGcACGCCGGGg -3'
miRNA:   3'- -GGGUCGc--CC-CGCGc----GCGC-UGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 24819 0.73 0.186798
Target:  5'- gCCUGcGCGGGGaCcUGCGCGugGCCGGcGg -3'
miRNA:   3'- -GGGU-CGCCCC-GcGCGCGCugCGGCC-C- -5'
5193 5' -66.4 NC_001798.1 + 37183 0.73 0.188519
Target:  5'- gCUCGGCGcgccaGGCGCcgcgccgaacgacggGCGCGGCGCCGGa -3'
miRNA:   3'- -GGGUCGCc----CCGCG---------------CGCGCUGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 54378 0.73 0.191126
Target:  5'- gCCCAcCGGGGgGC-CGCGGCGCggucggCGGGa -3'
miRNA:   3'- -GGGUcGCCCCgCGcGCGCUGCG------GCCC- -5'
5193 5' -66.4 NC_001798.1 + 27483 0.73 0.191126
Target:  5'- gCCGcGCgGGGGCGgGCGCGggaaaaaagccGCGCgGGGg -3'
miRNA:   3'- gGGU-CG-CCCCGCgCGCGC-----------UGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 66845 0.73 0.195542
Target:  5'- gCCCAGgcCGGGGUuuccggggagucGC-CGgGGCGCCGGGg -3'
miRNA:   3'- -GGGUC--GCCCCG------------CGcGCgCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 41366 0.73 0.200047
Target:  5'- aCCCGGCGGcucauGGCGC-CGgGGaugGCCGGGa -3'
miRNA:   3'- -GGGUCGCC-----CCGCGcGCgCUg--CGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 150466 0.73 0.200047
Target:  5'- gCCGcGCGGGG-GCGCGCGGCGCg--- -3'
miRNA:   3'- gGGU-CGCCCCgCGCGCGCUGCGgccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.