miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5193 5' -66.4 NC_001798.1 + 93086 1.11 0.000363
Target:  5'- cCCCAGCGGGGCGCGCGCGACGCCGGGa -3'
miRNA:   3'- -GGGUCGCCCCGCGCGCGCUGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36596 0.87 0.020652
Target:  5'- gCCgGGCGGGG-GCGCGCGGCGgCCGGGc -3'
miRNA:   3'- -GGgUCGCCCCgCGCGCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36554 0.87 0.020652
Target:  5'- gCCgGGCGGGG-GCGCGCGGCGgCCGGGc -3'
miRNA:   3'- -GGgUCGCCCCgCGCGCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36512 0.87 0.020652
Target:  5'- gCCgGGCGGGG-GCGCGCGGCGgCCGGGc -3'
miRNA:   3'- -GGgUCGCCCCgCGCGCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36143 0.84 0.034143
Target:  5'- gCCGGUGGGGCGCG-GCGGCGgUCGGGg -3'
miRNA:   3'- gGGUCGCCCCGCGCgCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 36311 0.84 0.034143
Target:  5'- -gCGGCGGGGCGCGgGcCGGgGCCGGGg -3'
miRNA:   3'- ggGUCGCCCCGCGCgC-GCUgCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 31338 0.83 0.035896
Target:  5'- gCCGGCGGGGgGCGCGCGcaggcGCGgCGGGu -3'
miRNA:   3'- gGGUCGCCCCgCGCGCGC-----UGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 85260 0.81 0.05619
Target:  5'- gCCGcGCGGGGcCGCGCGCGAgGCuuCGGGg -3'
miRNA:   3'- gGGU-CGCCCC-GCGCGCGCUgCG--GCCC- -5'
5193 5' -66.4 NC_001798.1 + 4361 0.81 0.049638
Target:  5'- gCCGGCGGGGgGCGCGcCGGCGgCGGu -3'
miRNA:   3'- gGGUCGCCCCgCGCGC-GCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 1285 0.81 0.05619
Target:  5'- aCCAGCGGGG-GCGCGuCGcCGUCGGGc -3'
miRNA:   3'- gGGUCGCCCCgCGCGC-GCuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 122107 0.8 0.062029
Target:  5'- gCCCGGCGGGGgGCGCuuuGCca-GCCGGGg -3'
miRNA:   3'- -GGGUCGCCCCgCGCG---CGcugCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 52486 0.8 0.062029
Target:  5'- gCCuGCGGGGaCGCGCGcCGGCGCaGGGa -3'
miRNA:   3'- gGGuCGCCCC-GCGCGC-GCUGCGgCCC- -5'
5193 5' -66.4 NC_001798.1 + 48376 0.79 0.073685
Target:  5'- gCCCcGCGGGGCGUGCcgccGCGAcCGCaCGGGc -3'
miRNA:   3'- -GGGuCGCCCCGCGCG----CGCU-GCG-GCCC- -5'
5193 5' -66.4 NC_001798.1 + 36621 0.79 0.079301
Target:  5'- ---nGCGGGG-GCGCGCGGCGgCCGGGc -3'
miRNA:   3'- ggguCGCCCCgCGCGCGCUGC-GGCCC- -5'
5193 5' -66.4 NC_001798.1 + 101979 0.79 0.079301
Target:  5'- cCCCGGgGGGGCGaUGUGCGGCGgCGGc -3'
miRNA:   3'- -GGGUCgCCCCGC-GCGCGCUGCgGCCc -5'
5193 5' -66.4 NC_001798.1 + 70325 0.79 0.075513
Target:  5'- gCCCGGCGGaGGCGCGgGCG-UGCUGGc -3'
miRNA:   3'- -GGGUCGCC-CCGCGCgCGCuGCGGCCc -5'
5193 5' -66.4 NC_001798.1 + 150573 0.79 0.071899
Target:  5'- gCCC-GCGGGGCgGCGCGgaGACGgCGGGg -3'
miRNA:   3'- -GGGuCGCCCCG-CGCGCg-CUGCgGCCC- -5'
5193 5' -66.4 NC_001798.1 + 86868 0.78 0.087427
Target:  5'- aCCCGGCGGcGGuCGCGCuuuucCGcCGCCGGGa -3'
miRNA:   3'- -GGGUCGCC-CC-GCGCGc----GCuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 2234 0.78 0.08327
Target:  5'- gCgCAGCGGgccgaaggcGGCGgGCGCGcCGCCGGGg -3'
miRNA:   3'- -GgGUCGCC---------CCGCgCGCGCuGCGGCCC- -5'
5193 5' -66.4 NC_001798.1 + 65684 0.78 0.088929
Target:  5'- cCCCGGUGGGGCGCGUgcucuguuuguuguGCGcCGCCaccaGGGa -3'
miRNA:   3'- -GGGUCGCCCCGCGCG--------------CGCuGCGG----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.