miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5194 3' -65 NC_001798.1 + 51203 0.66 0.497097
Target:  5'- -cGCCGGGCgUCCuUUCCgcGCCccaGGUCc -3'
miRNA:   3'- aaCGGCCCGgGGGcAAGGa-CGG---CCAG- -5'
5194 3' -65 NC_001798.1 + 126407 0.66 0.48797
Target:  5'- -cGCCGcucgucccccgaGGCCCCCGgcCCUG-CGGcCa -3'
miRNA:   3'- aaCGGC------------CCGGGGGCaaGGACgGCCaG- -5'
5194 3' -65 NC_001798.1 + 20017 0.66 0.48797
Target:  5'- -gGCCggggaGGGCCCCCccUCCgUGUCGGa- -3'
miRNA:   3'- aaCGG-----CCCGGGGGcaAGG-ACGGCCag -5'
5194 3' -65 NC_001798.1 + 137919 0.66 0.478922
Target:  5'- -cGCCGGGCggCCCGcgCCUcccccggccGCCcGGUCc -3'
miRNA:   3'- aaCGGCCCGg-GGGCaaGGA---------CGG-CCAG- -5'
5194 3' -65 NC_001798.1 + 146476 0.66 0.478922
Target:  5'- -cGCCgcGGGCUCCgGggCCggGCCGGg- -3'
miRNA:   3'- aaCGG--CCCGGGGgCaaGGa-CGGCCag -5'
5194 3' -65 NC_001798.1 + 34881 0.66 0.478922
Target:  5'- -cGCCGGGCggcuaCCCGggacccCCgGCCGGg- -3'
miRNA:   3'- aaCGGCCCGg----GGGCaa----GGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 33200 0.66 0.478922
Target:  5'- -aGCCGcccccaCCCCCGaggCCUGuuGGUCu -3'
miRNA:   3'- aaCGGCcc----GGGGGCaa-GGACggCCAG- -5'
5194 3' -65 NC_001798.1 + 73243 0.66 0.478021
Target:  5'- -gGCCcggGGGCCCCCGgggaCCUggaggcccaagauGCCGG-Cg -3'
miRNA:   3'- aaCGG---CCCGGGGGCaa--GGA-------------CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 38435 0.66 0.469957
Target:  5'- -gGCCGGGgCCCCacauuuaUCCgGUgGGUCa -3'
miRNA:   3'- aaCGGCCCgGGGGca-----AGGaCGgCCAG- -5'
5194 3' -65 NC_001798.1 + 5547 0.66 0.469957
Target:  5'- aUGCCGGccccgcGCUCCCGUUggccCCcGCCGGcCc -3'
miRNA:   3'- aACGGCC------CGGGGGCAA----GGaCGGCCaG- -5'
5194 3' -65 NC_001798.1 + 53841 0.66 0.469957
Target:  5'- -cGCCuGGGCCCCg---CCgaucGCCGGUUc -3'
miRNA:   3'- aaCGG-CCCGGGGgcaaGGa---CGGCCAG- -5'
5194 3' -65 NC_001798.1 + 75962 0.66 0.469957
Target:  5'- -cGCCGGGCCCCUGa-CCgugaUGCCcGUg -3'
miRNA:   3'- aaCGGCCCGGGGGCaaGG----ACGGcCAg -5'
5194 3' -65 NC_001798.1 + 77086 0.66 0.461079
Target:  5'- -cGCCGacGCCCCCGagaC-GCCGGUCc -3'
miRNA:   3'- aaCGGCc-CGGGGGCaagGaCGGCCAG- -5'
5194 3' -65 NC_001798.1 + 27919 0.66 0.45229
Target:  5'- -cGCCgGGGUCCCCG--CC-GCCGGg- -3'
miRNA:   3'- aaCGG-CCCGGGGGCaaGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 23664 0.66 0.45229
Target:  5'- -cGCCGGGCCCgCGcggCggugGCCGGcCg -3'
miRNA:   3'- aaCGGCCCGGGgGCaagGa---CGGCCaG- -5'
5194 3' -65 NC_001798.1 + 130449 0.67 0.443593
Target:  5'- -cGuCUGGGCCCCCGgccaCUGCUGcUCc -3'
miRNA:   3'- aaC-GGCCCGGGGGCaag-GACGGCcAG- -5'
5194 3' -65 NC_001798.1 + 34986 0.67 0.443593
Target:  5'- gUGCgGGGgCCCC--UCCgGCCGGg- -3'
miRNA:   3'- aACGgCCCgGGGGcaAGGaCGGCCag -5'
5194 3' -65 NC_001798.1 + 130162 0.67 0.434991
Target:  5'- --aUCGGGUCCCCGUcggaaUCCccauaCCGGUCg -3'
miRNA:   3'- aacGGCCCGGGGGCA-----AGGac---GGCCAG- -5'
5194 3' -65 NC_001798.1 + 111735 0.67 0.434991
Target:  5'- -cGCUuGGCCCCCGcgCCcccgGCCccGGUCc -3'
miRNA:   3'- aaCGGcCCGGGGGCaaGGa---CGG--CCAG- -5'
5194 3' -65 NC_001798.1 + 146625 0.67 0.426487
Target:  5'- -cGCCGcauuaGGCCCCCGcgggcaUCCggcgGCCGGcCc -3'
miRNA:   3'- aaCGGC-----CCGGGGGCa-----AGGa---CGGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.