miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 5' -60.4 NC_001798.1 + 53835 0.66 0.675532
Target:  5'- uGUCGCCGcCUGGGccccgccgaucGCCgguucgugGCGCUCAGc -3'
miRNA:   3'- -UAGCGGC-GACCU-----------CGGaa------CGCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 35532 0.66 0.665372
Target:  5'- -cCGCCGCggccggcgcGGGGCgUUGCcgGCCCGGc -3'
miRNA:   3'- uaGCGGCGa--------CCUCGgAACG--CGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 116776 0.66 0.665372
Target:  5'- -gCGCUGCUGuGcuCCgcgGCGCCCGAc -3'
miRNA:   3'- uaGCGGCGAC-CucGGaa-CGCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 56709 0.66 0.665372
Target:  5'- -gUGCCGCUGGcGU--UGCGCCgAGAg -3'
miRNA:   3'- uaGCGGCGACCuCGgaACGCGGgUUU- -5'
5195 5' -60.4 NC_001798.1 + 154513 0.66 0.664354
Target:  5'- -gCGCCGCgGGGcuGCCUUcccgcggGCGCCCc-- -3'
miRNA:   3'- uaGCGGCGaCCU--CGGAA-------CGCGGGuuu -5'
5195 5' -60.4 NC_001798.1 + 175 0.66 0.664354
Target:  5'- -gCGCCGCgGGGcuGCCUUcccgcggGCGCCCc-- -3'
miRNA:   3'- uaGCGGCGaCCU--CGGAA-------CGCGGGuuu -5'
5195 5' -60.4 NC_001798.1 + 27930 0.66 0.655185
Target:  5'- -cCGCCGCcGGGGUCccgGCGCCg--- -3'
miRNA:   3'- uaGCGGCGaCCUCGGaa-CGCGGguuu -5'
5195 5' -60.4 NC_001798.1 + 109347 0.66 0.644979
Target:  5'- cUCGCgcgUGCUGGccGGCCUgGCcGCCCGGGg -3'
miRNA:   3'- uAGCG---GCGACC--UCGGAaCG-CGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 134205 0.66 0.644979
Target:  5'- cUCcCCGCUGGAGCCccuggGgGaCCCGAc -3'
miRNA:   3'- uAGcGGCGACCUCGGaa---CgC-GGGUUu -5'
5195 5' -60.4 NC_001798.1 + 98905 0.66 0.644979
Target:  5'- -gCGCCGCUGc--CCgacGCGCCCGGAg -3'
miRNA:   3'- uaGCGGCGACcucGGaa-CGCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 126404 0.66 0.644979
Target:  5'- cGUCGCCGCUcgucccccgaGGcccccGGCCcUGCGgCCAAGc -3'
miRNA:   3'- -UAGCGGCGA----------CC-----UCGGaACGCgGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 133102 0.66 0.634764
Target:  5'- -gUGCUGCUGGAgGCCUgucuucGCGUCCc-- -3'
miRNA:   3'- uaGCGGCGACCU-CGGAa-----CGCGGGuuu -5'
5195 5' -60.4 NC_001798.1 + 72481 0.66 0.623525
Target:  5'- gGUCGCagacgcccacgagCGcCUGGGGCCcugGCGCCCcGAg -3'
miRNA:   3'- -UAGCG-------------GC-GACCUCGGaa-CGCGGGuUU- -5'
5195 5' -60.4 NC_001798.1 + 56525 0.67 0.614334
Target:  5'- gAUCGUgGC-GGuGCCgggGCGCCCGc- -3'
miRNA:   3'- -UAGCGgCGaCCuCGGaa-CGCGGGUuu -5'
5195 5' -60.4 NC_001798.1 + 149972 0.67 0.614334
Target:  5'- -aCGCCGacgGGGGCgcgGCGCCCGc- -3'
miRNA:   3'- uaGCGGCga-CCUCGgaaCGCGGGUuu -5'
5195 5' -60.4 NC_001798.1 + 24887 0.67 0.614334
Target:  5'- cUgGUCGCcGGGGCCcUGgGCCCGGc -3'
miRNA:   3'- uAgCGGCGaCCUCGGaACgCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 3759 0.67 0.613314
Target:  5'- cGUCGCCcaGCUcGGGcgcccacacgggcGCCgggGCGCCCGAGg -3'
miRNA:   3'- -UAGCGG--CGA-CCU-------------CGGaa-CGCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 79934 0.67 0.603117
Target:  5'- uGUCGCUgggcccaGCUGG-GCUggGCGUCCGGAg -3'
miRNA:   3'- -UAGCGG-------CGACCuCGGaaCGCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 113305 0.67 0.593958
Target:  5'- --aGCCGCUGGAGCUggUG-GCCgCGGg -3'
miRNA:   3'- uagCGGCGACCUCGGa-ACgCGG-GUUu -5'
5195 5' -60.4 NC_001798.1 + 37166 0.67 0.593958
Target:  5'- -gCGCCGcCUGGcgGGCCgcucgGCGCgCCAGg -3'
miRNA:   3'- uaGCGGC-GACC--UCGGaa---CGCG-GGUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.