Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 40133 | 0.67 | 0.755983 |
Target: 5'- gGGCUGGGAuGGCgGGU--GUCCUCCg -3' miRNA: 3'- -CUGGCCUUuCCGgUCGagCAGGAGGg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 55981 | 0.67 | 0.755983 |
Target: 5'- cGCCGGGGAGGCCgcgggggcgaggGGCUgGUaggcgggUCCCg -3' miRNA: 3'- cUGGCCUUUCCGG------------UCGAgCAgg-----AGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 111589 | 0.67 | 0.765336 |
Target: 5'- uGAgCGGggGGcCCGGCggggCGgCCUCCUg -3' miRNA: 3'- -CUgGCCuuUCcGGUCGa---GCaGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 13545 | 0.67 | 0.765336 |
Target: 5'- -cCCGGggGGGUcgguCAGCUgGUCCaaaaCCg -3' miRNA: 3'- cuGGCCuuUCCG----GUCGAgCAGGag--GG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 86448 | 0.67 | 0.765336 |
Target: 5'- -cCCGGGgacgGGGGCCGGUUCGUgagCCUgCUu -3' miRNA: 3'- cuGGCCU----UUCCGGUCGAGCA---GGAgGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 127947 | 0.67 | 0.78369 |
Target: 5'- -cCCGGGcgaaAAGGcCCGGCccgCGUCCccggCCCu -3' miRNA: 3'- cuGGCCU----UUCC-GGUCGa--GCAGGa---GGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 48397 | 0.67 | 0.78369 |
Target: 5'- cGACCGcacGGGCCcccgcccGCUCGgCUUCCCg -3' miRNA: 3'- -CUGGCcuuUCCGGu------CGAGCaGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 152094 | 0.67 | 0.78369 |
Target: 5'- gGGCCGG--GGGUCGGCcccgucaagCGUCCccgCCCc -3' miRNA: 3'- -CUGGCCuuUCCGGUCGa--------GCAGGa--GGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 57565 | 0.67 | 0.78369 |
Target: 5'- gGACgCGGAGGGGgCGGCauugcucgCGUUCcCCCg -3' miRNA: 3'- -CUG-GCCUUUCCgGUCGa-------GCAGGaGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 36110 | 0.67 | 0.792674 |
Target: 5'- ---gGGggGGGcCCGGCUgCGUCUcgccgcgaUCCCg -3' miRNA: 3'- cuggCCuuUCC-GGUCGA-GCAGG--------AGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 139370 | 0.67 | 0.801518 |
Target: 5'- cGGCgGGGAGGGCUcGCgggaCGUCCgggCaCCa -3' miRNA: 3'- -CUGgCCUUUCCGGuCGa---GCAGGa--G-GG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 66883 | 0.67 | 0.801518 |
Target: 5'- gGGCUugGGAAAGGCCacgggggcggGGC-CGUCgCUCCa -3' miRNA: 3'- -CUGG--CCUUUCCGG----------UCGaGCAG-GAGGg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 1714 | 0.67 | 0.801518 |
Target: 5'- cGGCCGGA--GGCCAGCacggugCGgcgCaggUCCCg -3' miRNA: 3'- -CUGGCCUuuCCGGUCGa-----GCa--Gg--AGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 37271 | 0.66 | 0.810215 |
Target: 5'- uACCGGAAacuaugauugGGGCCcacccuGGCgugggaggCGaCCUCCCg -3' miRNA: 3'- cUGGCCUU----------UCCGG------UCGa-------GCaGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 22977 | 0.66 | 0.81621 |
Target: 5'- -uCCGGGGAGGCCGucgacgagccugccGCggacggCGUCgUCUCg -3' miRNA: 3'- cuGGCCUUUCCGGU--------------CGa-----GCAGgAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 103184 | 0.66 | 0.818755 |
Target: 5'- gGugCGGucGGGCgGaacCUCGUCCcCCCg -3' miRNA: 3'- -CugGCCuuUCCGgUc--GAGCAGGaGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 86894 | 0.66 | 0.818755 |
Target: 5'- cGCCGGGAAccCCGGCguggagCGccgggCCUCCCg -3' miRNA: 3'- cUGGCCUUUccGGUCGa-----GCa----GGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 52981 | 0.66 | 0.819601 |
Target: 5'- cGACCGGGcuGGgCGGCcCGccacgcccauaggcgCCUCCCc -3' miRNA: 3'- -CUGGCCUuuCCgGUCGaGCa--------------GGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 113344 | 0.66 | 0.819601 |
Target: 5'- gGACCGGAcgggcgguGGcGCCGGCauguauuauagccgcCGUCCUCgCCu -3' miRNA: 3'- -CUGGCCUu-------UC-CGGUCGa--------------GCAGGAG-GG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 82787 | 0.66 | 0.834526 |
Target: 5'- gGACuCGGAugauaccGAGGC--GCUCGacccCCUCCCa -3' miRNA: 3'- -CUG-GCCU-------UUCCGguCGAGCa---GGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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