Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5198 | 3' | -60.4 | NC_001798.1 | + | 75976 | 0.7 | 0.504883 |
Target: 5'- cCGUGaUGCCCGUGCCCGcCGcccCGGGc -3' miRNA: 3'- -GUAC-GCGGGCAUGGGCaGCuc-GCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 65792 | 0.69 | 0.581509 |
Target: 5'- gCAUGCacaGCCCGaUGCCCccguugCGGGCGaGGAu -3' miRNA: 3'- -GUACG---CGGGC-AUGGGca----GCUCGC-CCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 53606 | 0.66 | 0.737537 |
Target: 5'- gGUGCGCgC---CCCGUUcaaGAGCGGGGc -3' miRNA: 3'- gUACGCGgGcauGGGCAG---CUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 52779 | 0.76 | 0.246143 |
Target: 5'- --gGCGcCCCGggcGCCCGU-GAGCGGGAc -3' miRNA: 3'- guaCGC-GGGCa--UGGGCAgCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 49767 | 0.7 | 0.494665 |
Target: 5'- cCGUGCGgggaguuCCCGUggagGCCCGgCGAcuGCGGGAg -3' miRNA: 3'- -GUACGC-------GGGCA----UGGGCaGCU--CGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 47685 | 0.69 | 0.571754 |
Target: 5'- gAUGCGCgCGcGCCCGagGGGCGaGGu -3' miRNA: 3'- gUACGCGgGCaUGGGCagCUCGC-CCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 36400 | 0.68 | 0.650378 |
Target: 5'- --gGCGCCgGggccccCCUGcCGGGCGGGGc -3' miRNA: 3'- guaCGCGGgCau----GGGCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 34837 | 0.68 | 0.61095 |
Target: 5'- --gGgGCCCGggccggaCCGcCGGGCGGGGg -3' miRNA: 3'- guaCgCGGGCaug----GGCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 33533 | 0.66 | 0.765351 |
Target: 5'- gCAUGCacGCCCucugccCCCGgggaCGGGUGGGAg -3' miRNA: 3'- -GUACG--CGGGcau---GGGCa---GCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 28823 | 0.69 | 0.581509 |
Target: 5'- --cGgGCCCGgg-CCGUCGGGCGGu- -3' miRNA: 3'- guaCgCGGGCaugGGCAGCUCGCCcu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 27110 | 0.67 | 0.708957 |
Target: 5'- gGUG-GCCCGaGCCCccccgcagGAGCGGGAg -3' miRNA: 3'- gUACgCGGGCaUGGGcag-----CUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 25951 | 0.67 | 0.679832 |
Target: 5'- aGUGCG-CCGUGCgCUGgccggCGGcGCGGGAc -3' miRNA: 3'- gUACGCgGGCAUG-GGCa----GCU-CGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 25865 | 0.67 | 0.708957 |
Target: 5'- cCGUGCGCgCCGcggacugGCCCGcCGA-CGGGc -3' miRNA: 3'- -GUACGCG-GGCa------UGGGCaGCUcGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 25032 | 0.67 | 0.67004 |
Target: 5'- --cGCGCCCGccUCCG-CGccGCGGGAg -3' miRNA: 3'- guaCGCGGGCauGGGCaGCu-CGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 24870 | 0.67 | 0.699298 |
Target: 5'- cCGUGCGCgCCGUgaGCCUGgUCGc-CGGGGc -3' miRNA: 3'- -GUACGCG-GGCA--UGGGC-AGCucGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 24711 | 0.74 | 0.295407 |
Target: 5'- --cGCGCCCGggGCCCG-CGGGCGcGGc -3' miRNA: 3'- guaCGCGGGCa-UGGGCaGCUCGC-CCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 24438 | 0.68 | 0.650378 |
Target: 5'- --aGCGCgCgGUGCCCGcCGGcuacggcgccGCGGGGg -3' miRNA: 3'- guaCGCG-GgCAUGGGCaGCU----------CGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 24400 | 0.7 | 0.523686 |
Target: 5'- --cGC-CCCGUugCCGUCG-GCGGcGGc -3' miRNA: 3'- guaCGcGGGCAugGGCAGCuCGCC-CU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 20897 | 0.68 | 0.650378 |
Target: 5'- -cUGCGCuuCCGUgaACCCGg-GGGUGGGGa -3' miRNA: 3'- guACGCG--GGCA--UGGGCagCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 16166 | 0.66 | 0.728085 |
Target: 5'- --aGCGCCaCGggcgGCCCG-CGGGgacCGGGGg -3' miRNA: 3'- guaCGCGG-GCa---UGGGCaGCUC---GCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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