miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5198 3' -60.4 NC_001798.1 + 24438 0.68 0.650378
Target:  5'- --aGCGCgCgGUGCCCGcCGGcuacggcgccGCGGGGg -3'
miRNA:   3'- guaCGCG-GgCAUGGGCaGCU----------CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 36400 0.68 0.650378
Target:  5'- --gGCGCCgGggccccCCUGcCGGGCGGGGc -3'
miRNA:   3'- guaCGCGGgCau----GGGCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 20897 0.68 0.650378
Target:  5'- -cUGCGCuuCCGUgaACCCGg-GGGUGGGGa -3'
miRNA:   3'- guACGCG--GGCA--UGGGCagCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 4822 0.68 0.650378
Target:  5'- cCGUGCcaCCCGaACCCGggccgCGcGGCGGGGc -3'
miRNA:   3'- -GUACGc-GGGCaUGGGCa----GC-UCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 98856 0.68 0.630662
Target:  5'- aCGUGUGCCCGccCCCGaCGGGCGc-- -3'
miRNA:   3'- -GUACGCGGGCauGGGCaGCUCGCccu -5'
5198 3' -60.4 NC_001798.1 + 102444 0.68 0.61095
Target:  5'- --gGgGCCCGcgaacagcaUACCCGgguacgggUGGGCGGGAg -3'
miRNA:   3'- guaCgCGGGC---------AUGGGCa-------GCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 34837 0.68 0.61095
Target:  5'- --gGgGCCCGggccggaCCGcCGGGCGGGGg -3'
miRNA:   3'- guaCgCGGGCaug----GGCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 132140 0.68 0.601113
Target:  5'- -cUGCGCCgcCGgggGCCgG-CGGGCGGGGc -3'
miRNA:   3'- guACGCGG--GCa--UGGgCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 149435 0.68 0.601113
Target:  5'- -uUGCGCgCGUGCUCGggGAGCaGGGu -3'
miRNA:   3'- guACGCGgGCAUGGGCagCUCG-CCCu -5'
5198 3' -60.4 NC_001798.1 + 65792 0.69 0.581509
Target:  5'- gCAUGCacaGCCCGaUGCCCccguugCGGGCGaGGAu -3'
miRNA:   3'- -GUACG---CGGGC-AUGGGca----GCUCGC-CCU- -5'
5198 3' -60.4 NC_001798.1 + 28823 0.69 0.581509
Target:  5'- --cGgGCCCGgg-CCGUCGGGCGGu- -3'
miRNA:   3'- guaCgCGGGCaugGGCAGCUCGCCcu -5'
5198 3' -60.4 NC_001798.1 + 47685 0.69 0.571754
Target:  5'- gAUGCGCgCGcGCCCGagGGGCGaGGu -3'
miRNA:   3'- gUACGCGgGCaUGGGCagCUCGC-CCu -5'
5198 3' -60.4 NC_001798.1 + 149988 0.69 0.562039
Target:  5'- --gGCGCCCGcggACgCCGgggCGAGCGGc- -3'
miRNA:   3'- guaCGCGGGCa--UG-GGCa--GCUCGCCcu -5'
5198 3' -60.4 NC_001798.1 + 1807 0.69 0.55237
Target:  5'- gCGUGCuGCCgCGagaccacggGCCCGUCG-GCGGGc -3'
miRNA:   3'- -GUACG-CGG-GCa--------UGGGCAGCuCGCCCu -5'
5198 3' -60.4 NC_001798.1 + 24400 0.7 0.523686
Target:  5'- --cGC-CCCGUugCCGUCG-GCGGcGGc -3'
miRNA:   3'- guaCGcGGGCAugGGCAGCuCGCC-CU- -5'
5198 3' -60.4 NC_001798.1 + 75976 0.7 0.504883
Target:  5'- cCGUGaUGCCCGUGCCCGcCGcccCGGGc -3'
miRNA:   3'- -GUAC-GCGGGCAUGGGCaGCuc-GCCCu -5'
5198 3' -60.4 NC_001798.1 + 113789 0.7 0.502087
Target:  5'- --cGCcCCCGUGCCUGUUGGGCacagugggugcucgGGGAc -3'
miRNA:   3'- guaCGcGGGCAUGGGCAGCUCG--------------CCCU- -5'
5198 3' -60.4 NC_001798.1 + 49767 0.7 0.494665
Target:  5'- cCGUGCGgggaguuCCCGUggagGCCCGgCGAcuGCGGGAg -3'
miRNA:   3'- -GUACGC-------GGGCA----UGGGCaGCU--CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 106667 0.71 0.476336
Target:  5'- --cGCGCCUGcguucggucaggcUGCUCGUgCGAGCGGGc -3'
miRNA:   3'- guaCGCGGGC-------------AUGGGCA-GCUCGCCCu -5'
5198 3' -60.4 NC_001798.1 + 104978 0.71 0.468198
Target:  5'- aCAUGCGCCCGU-CUCGaaagUCGGcgcuGCGGGu -3'
miRNA:   3'- -GUACGCGGGCAuGGGC----AGCU----CGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.