miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 88892 1.09 0.001481
Target:  5'- gGGCAGAAGACCGUGCUGCACCCCGGUg -3'
miRNA:   3'- -CCGUCUUCUGGCACGACGUGGGGCCA- -5'
5199 3' -59 NC_001798.1 + 27962 0.74 0.365727
Target:  5'- cGGCGcuccaGCCGUGCcGCGCCCCGGc -3'
miRNA:   3'- -CCGUcuuc-UGGCACGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 77214 0.73 0.373661
Target:  5'- cGGUGGAcgcGGCCGUGCgggcgcaugGCGCCCUGGc -3'
miRNA:   3'- -CCGUCUu--CUGGCACGa--------CGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 135784 0.73 0.389055
Target:  5'- cGGCccgccggAGGAGGCCGUGUgcGCGgCCCGGg -3'
miRNA:   3'- -CCG-------UCUUCUGGCACGa-CGUgGGGCCa -5'
5199 3' -59 NC_001798.1 + 2410 0.72 0.450105
Target:  5'- cGGCcGAGGgcGCCGgcgugugGCUGgGCCCCGGc -3'
miRNA:   3'- -CCGuCUUC--UGGCa------CGACgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 23554 0.72 0.462757
Target:  5'- aGGCGGggGugcccgcgagggccCCGgggGCgGCGCCCCGGc -3'
miRNA:   3'- -CCGUCuuCu-------------GGCa--CGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 110285 0.72 0.468236
Target:  5'- cGGCcucguGggGGCCGUGUuucUGCgcuacACCCCGGc -3'
miRNA:   3'- -CCGu----CuuCUGGCACG---ACG-----UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 135218 0.71 0.486734
Target:  5'- gGGCcucgGGGAGGCCGgGCUGCcggaaGCCCgGGg -3'
miRNA:   3'- -CCG----UCUUCUGGCaCGACG-----UGGGgCCa -5'
5199 3' -59 NC_001798.1 + 2981 0.71 0.496112
Target:  5'- cGGCGGGGcGGCCG-GCccGCggGCCCCGGg -3'
miRNA:   3'- -CCGUCUU-CUGGCaCGa-CG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 102779 0.71 0.515106
Target:  5'- cGGCGGggGA-UGUGUcaugGCACCCgGGg -3'
miRNA:   3'- -CCGUCuuCUgGCACGa---CGUGGGgCCa -5'
5199 3' -59 NC_001798.1 + 23893 0.71 0.515106
Target:  5'- aGGCGGAGGAggcgcgggcCCGguucgagGCcucggGCGCCCCGGc -3'
miRNA:   3'- -CCGUCUUCU---------GGCa------CGa----CGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 123909 0.71 0.524714
Target:  5'- cGGCccccGAauccGGGgCGUGCUGUGCCCUGGg -3'
miRNA:   3'- -CCGu---CU----UCUgGCACGACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 97470 0.7 0.534389
Target:  5'- cGGCuGggGGCCG-GCgGCGCgaCCGGg -3'
miRNA:   3'- -CCGuCuuCUGGCaCGaCGUGg-GGCCa -5'
5199 3' -59 NC_001798.1 + 124077 0.7 0.544126
Target:  5'- cGGgAGGAGGCgGcGcCUGCGCCCCGa- -3'
miRNA:   3'- -CCgUCUUCUGgCaC-GACGUGGGGCca -5'
5199 3' -59 NC_001798.1 + 22796 0.7 0.544126
Target:  5'- cGGCGGAGacGACCG-GCg--GCCCCGGa -3'
miRNA:   3'- -CCGUCUU--CUGGCaCGacgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 70550 0.7 0.553921
Target:  5'- cGCuGGAGGCCGccggGCUGCGCaCCaCGGc -3'
miRNA:   3'- cCGuCUUCUGGCa---CGACGUG-GG-GCCa -5'
5199 3' -59 NC_001798.1 + 87137 0.7 0.56278
Target:  5'- gGGCAugggcuacuaccuGggGAUCGgggGCUGCuGCCCCGcGUg -3'
miRNA:   3'- -CCGU-------------CuuCUGGCa--CGACG-UGGGGC-CA- -5'
5199 3' -59 NC_001798.1 + 44986 0.7 0.573659
Target:  5'- aGGCGGA--GCCGcgGCUGCaggagGCCCUGGc -3'
miRNA:   3'- -CCGUCUucUGGCa-CGACG-----UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 81739 0.7 0.582596
Target:  5'- cGCAGGucccgccGGACgCGUGCcaaaucgcgcGCGCCCCGGg -3'
miRNA:   3'- cCGUCU-------UCUG-GCACGa---------CGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 40936 0.7 0.583591
Target:  5'- gGGguGuguGAUCGcGCagGCGCCCCGGg -3'
miRNA:   3'- -CCguCuu-CUGGCaCGa-CGUGGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.