miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 2235 0.66 0.761018
Target:  5'- cGCAGcGGGCCGaaggcgGCgggcGCGCCgCCGGg -3'
miRNA:   3'- cCGUCuUCUGGCa-----CGa---CGUGG-GGCCa -5'
5199 3' -59 NC_001798.1 + 2410 0.72 0.450105
Target:  5'- cGGCcGAGGgcGCCGgcgugugGCUGgGCCCCGGc -3'
miRNA:   3'- -CCGuCUUC--UGGCa------CGACgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 2610 0.68 0.683611
Target:  5'- gGGCGcGggGcGCCGcccgGCgGCGCCCUGGc -3'
miRNA:   3'- -CCGU-CuuC-UGGCa---CGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 2981 0.71 0.496112
Target:  5'- cGGCGGGGcGGCCG-GCccGCggGCCCCGGg -3'
miRNA:   3'- -CCGUCUU-CUGGCaCGa-CG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 3019 0.68 0.693519
Target:  5'- cGCGGcGGGCCGgGCUccgGCcaGCCCCGGc -3'
miRNA:   3'- cCGUCuUCUGGCaCGA---CG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 3205 0.66 0.797366
Target:  5'- cGGCGcGGAGGCgGgcgcgGCgcucagGCGCCCCaGGg -3'
miRNA:   3'- -CCGU-CUUCUGgCa----CGa-----CGUGGGG-CCa -5'
5199 3' -59 NC_001798.1 + 3895 0.68 0.683611
Target:  5'- gGGCGGggGGCCGgccccggGCcacgGCuCCCCGc- -3'
miRNA:   3'- -CCGUCuuCUGGCa------CGa---CGuGGGGCca -5'
5199 3' -59 NC_001798.1 + 4119 0.68 0.66368
Target:  5'- gGGCGGGcucGGCCGggGCgccGC-CCCCGGg -3'
miRNA:   3'- -CCGUCUu--CUGGCa-CGa--CGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 8948 0.67 0.751635
Target:  5'- cGGCGGGGuGGCCGccgGaccuuuaUGCGCCUCGGc -3'
miRNA:   3'- -CCGUCUU-CUGGCa--Cg------ACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 14084 0.67 0.732574
Target:  5'- ------cGACCGcuccauagcUGCUGUACCCCGGg -3'
miRNA:   3'- ccgucuuCUGGC---------ACGACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 20473 0.66 0.779446
Target:  5'- aGCAGAGcGCCgGUGCgcgUGCGcgauCCCCGGa -3'
miRNA:   3'- cCGUCUUcUGG-CACG---ACGU----GGGGCCa -5'
5199 3' -59 NC_001798.1 + 22796 0.7 0.544126
Target:  5'- cGGCGGAGacGACCG-GCg--GCCCCGGa -3'
miRNA:   3'- -CCGUCUU--CUGGCaCGacgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 23554 0.72 0.462757
Target:  5'- aGGCGGggGugcccgcgagggccCCGgggGCgGCGCCCCGGc -3'
miRNA:   3'- -CCGUCuuCu-------------GGCa--CGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 23638 0.66 0.806115
Target:  5'- cGGC-GAccgcGGGCCGccUGgaGCGCCgCCGGg -3'
miRNA:   3'- -CCGuCU----UCUGGC--ACgaCGUGG-GGCCa -5'
5199 3' -59 NC_001798.1 + 23893 0.71 0.515106
Target:  5'- aGGCGGAGGAggcgcgggcCCGguucgagGCcucggGCGCCCCGGc -3'
miRNA:   3'- -CCGUCUUCU---------GGCa------CGa----CGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 24127 0.66 0.761018
Target:  5'- cGGCAGcguggcgcGGGCCGUGCccCACCUgGGg -3'
miRNA:   3'- -CCGUCu-------UCUGGCACGacGUGGGgCCa -5'
5199 3' -59 NC_001798.1 + 24168 0.66 0.770291
Target:  5'- uGGCGGcGGGCCGcuucgGCUGgGgCCUGGc -3'
miRNA:   3'- -CCGUCuUCUGGCa----CGACgUgGGGCCa -5'
5199 3' -59 NC_001798.1 + 26337 0.69 0.63362
Target:  5'- gGGCGcGAcGCCGUGCgcgGCGgCCCGGc -3'
miRNA:   3'- -CCGUcUUcUGGCACGa--CGUgGGGCCa -5'
5199 3' -59 NC_001798.1 + 27962 0.74 0.365727
Target:  5'- cGGCGcuccaGCCGUGCcGCGCCCCGGc -3'
miRNA:   3'- -CCGUcuuc-UGGCACGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 27989 0.69 0.593556
Target:  5'- cGCucca-GCCGUGCcGCGCCCCGGc -3'
miRNA:   3'- cCGucuucUGGCACGaCGUGGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.