miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 28691 0.67 0.703378
Target:  5'- aGGCGGucaucGGACCGUGcCUGgAgCCCGa- -3'
miRNA:   3'- -CCGUCu----UCUGGCAC-GACgUgGGGCca -5'
5199 3' -59 NC_001798.1 + 28863 0.66 0.770291
Target:  5'- gGGCGGccucGGCCG-GCggaGCCCCGGa -3'
miRNA:   3'- -CCGUCuu--CUGGCaCGacgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 29440 0.66 0.792047
Target:  5'- cGGCGGggGGCgGcgcaUGCUaaugggguucuuggaGUACaCCCGGUu -3'
miRNA:   3'- -CCGUCuuCUGgC----ACGA---------------CGUG-GGGCCA- -5'
5199 3' -59 NC_001798.1 + 29980 0.66 0.760084
Target:  5'- cGGgGGAcccccguGGGCCGUGCgccGCcCCCCGa- -3'
miRNA:   3'- -CCgUCU-------UCUGGCACGa--CGuGGGGCca -5'
5199 3' -59 NC_001798.1 + 35195 0.68 0.693519
Target:  5'- cGGCGGcGGGCCccugcguucguUGCUGCcgcgcCCCCGGUu -3'
miRNA:   3'- -CCGUCuUCUGGc----------ACGACGu----GGGGCCA- -5'
5199 3' -59 NC_001798.1 + 35434 0.67 0.722914
Target:  5'- cGGCGGGAGGCgUGggccGCUgGCGCCgCGGc -3'
miRNA:   3'- -CCGUCUUCUG-GCa---CGA-CGUGGgGCCa -5'
5199 3' -59 NC_001798.1 + 40936 0.7 0.583591
Target:  5'- gGGguGuguGAUCGcGCagGCGCCCCGGg -3'
miRNA:   3'- -CCguCuu-CUGGCaCGa-CGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 41526 0.66 0.779446
Target:  5'- gGGCGGu--AUCGUugUGCGCCCCGGc -3'
miRNA:   3'- -CCGUCuucUGGCAcgACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 44986 0.7 0.573659
Target:  5'- aGGCGGA--GCCGcgGCUGCaggagGCCCUGGc -3'
miRNA:   3'- -CCGUCUucUGGCa-CGACG-----UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 49857 0.66 0.788473
Target:  5'- cGGCGGAGGAacCCGgg--GCGCCCCu-- -3'
miRNA:   3'- -CCGUCUUCU--GGCacgaCGUGGGGcca -5'
5199 3' -59 NC_001798.1 + 51137 0.66 0.806115
Target:  5'- cGcCGGGAGGCCc-GCgGuCACCCCGGg -3'
miRNA:   3'- cC-GUCUUCUGGcaCGaC-GUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 51960 0.66 0.788473
Target:  5'- cGCGGGagGGGCCGcGCcccccCACCCCGGc -3'
miRNA:   3'- cCGUCU--UCUGGCaCGac---GUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 52166 0.68 0.653674
Target:  5'- cGCGGGAGGCCGcguuUGCgggGCGCguCCUGGa -3'
miRNA:   3'- cCGUCUUCUGGC----ACGa--CGUG--GGGCCa -5'
5199 3' -59 NC_001798.1 + 63937 0.68 0.66368
Target:  5'- cGGUAGAAG-CCGaGCU-CGCCCuCGGa -3'
miRNA:   3'- -CCGUCUUCuGGCaCGAcGUGGG-GCCa -5'
5199 3' -59 NC_001798.1 + 68355 0.67 0.751635
Target:  5'- aGGCGGcguaugugcAGGugCGUGCgguaggGCGCCCCc-- -3'
miRNA:   3'- -CCGUC---------UUCugGCACGa-----CGUGGGGcca -5'
5199 3' -59 NC_001798.1 + 68926 0.67 0.742151
Target:  5'- aGGCauucGGAAaACCGguccaGCcGCGCCCCGGc -3'
miRNA:   3'- -CCG----UCUUcUGGCa----CGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 70328 0.67 0.703378
Target:  5'- cGGCGGAGGcgcgGgCGUGCUgGCACCCgcuccUGGa -3'
miRNA:   3'- -CCGUCUUC----UgGCACGA-CGUGGG-----GCCa -5'
5199 3' -59 NC_001798.1 + 70550 0.7 0.553921
Target:  5'- cGCuGGAGGCCGccggGCUGCGCaCCaCGGc -3'
miRNA:   3'- cCGuCUUCUGGCa---CGACGUG-GG-GCCa -5'
5199 3' -59 NC_001798.1 + 71407 0.67 0.742151
Target:  5'- uGGCGGggGugcCCGcGCggacGCcCCCCGGc -3'
miRNA:   3'- -CCGUCuuCu--GGCaCGa---CGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 72223 0.69 0.613561
Target:  5'- cGCcaGGggGGCCGUcgagcaGCUGCGgCCCgCGGUc -3'
miRNA:   3'- cCG--UCuuCUGGCA------CGACGU-GGG-GCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.