miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 76010 0.7 0.583591
Target:  5'- cGGCAGGGccCCGUGCccGCccGCCCUGGg -3'
miRNA:   3'- -CCGUCUUcuGGCACGa-CG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 27989 0.69 0.593556
Target:  5'- cGCucca-GCCGUGCcGCGCCCCGGc -3'
miRNA:   3'- cCGucuucUGGCACGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 135310 0.69 0.613561
Target:  5'- gGGCcc-GGGCCGUGCUGgaGCgCCUGGUg -3'
miRNA:   3'- -CCGucuUCUGGCACGACg-UG-GGGCCA- -5'
5199 3' -59 NC_001798.1 + 91206 0.69 0.613561
Target:  5'- cGGCccGAGGGCCuuugGCUGCGuuCCGGUc -3'
miRNA:   3'- -CCGu-CUUCUGGca--CGACGUggGGCCA- -5'
5199 3' -59 NC_001798.1 + 72223 0.69 0.613561
Target:  5'- cGCcaGGggGGCCGUcgagcaGCUGCGgCCCgCGGUc -3'
miRNA:   3'- cCG--UCuuCUGGCA------CGACGU-GGG-GCCA- -5'
5199 3' -59 NC_001798.1 + 151391 0.69 0.623587
Target:  5'- -aCAGggGACaCGUGUUGCGCaaCGGa -3'
miRNA:   3'- ccGUCuuCUG-GCACGACGUGggGCCa -5'
5199 3' -59 NC_001798.1 + 26337 0.69 0.63362
Target:  5'- gGGCGcGAcGCCGUGCgcgGCGgCCCGGc -3'
miRNA:   3'- -CCGUcUUcUGGCACGa--CGUgGGGCCa -5'
5199 3' -59 NC_001798.1 + 147022 0.68 0.643651
Target:  5'- gGGCGGGccggggcuuGGCCGccgaGgUGCGCCCCGGc -3'
miRNA:   3'- -CCGUCUu--------CUGGCa---CgACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 132296 0.68 0.650668
Target:  5'- cGGCAGuuuacGGACCGcgUGCUGCugcuccacucgcucACCCCGc- -3'
miRNA:   3'- -CCGUCu----UCUGGC--ACGACG--------------UGGGGCca -5'
5199 3' -59 NC_001798.1 + 124636 0.68 0.653674
Target:  5'- uGGCuGGAGGCaaacacgauCGUGCUGCGCgagccgUCCGGg -3'
miRNA:   3'- -CCGuCUUCUG---------GCACGACGUG------GGGCCa -5'
5199 3' -59 NC_001798.1 + 52166 0.68 0.653674
Target:  5'- cGCGGGAGGCCGcguuUGCgggGCGCguCCUGGa -3'
miRNA:   3'- cCGUCUUCUGGC----ACGa--CGUG--GGGCCa -5'
5199 3' -59 NC_001798.1 + 110371 0.68 0.66368
Target:  5'- aGCAGcuggcccaGGGGCCGgugGCggGCACCCCGa- -3'
miRNA:   3'- cCGUC--------UUCUGGCa--CGa-CGUGGGGCca -5'
5199 3' -59 NC_001798.1 + 4119 0.68 0.66368
Target:  5'- gGGCGGGcucGGCCGggGCgccGC-CCCCGGg -3'
miRNA:   3'- -CCGUCUu--CUGGCa-CGa--CGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 63937 0.68 0.66368
Target:  5'- cGGUAGAAG-CCGaGCU-CGCCCuCGGa -3'
miRNA:   3'- -CCGUCUUCuGGCaCGAcGUGGG-GCCa -5'
5199 3' -59 NC_001798.1 + 113498 0.68 0.66368
Target:  5'- gGGCGGcgcGGCCcUG-UGCGCCCUGGUg -3'
miRNA:   3'- -CCGUCuu-CUGGcACgACGUGGGGCCA- -5'
5199 3' -59 NC_001798.1 + 2610 0.68 0.683611
Target:  5'- gGGCGcGggGcGCCGcccgGCgGCGCCCUGGc -3'
miRNA:   3'- -CCGU-CuuC-UGGCa---CGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 3895 0.68 0.683611
Target:  5'- gGGCGGggGGCCGgccccggGCcacgGCuCCCCGc- -3'
miRNA:   3'- -CCGUCuuCUGGCa------CGa---CGuGGGGCca -5'
5199 3' -59 NC_001798.1 + 3019 0.68 0.693519
Target:  5'- cGCGGcGGGCCGgGCUccgGCcaGCCCCGGc -3'
miRNA:   3'- cCGUCuUCUGGCaCGA---CG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 35195 0.68 0.693519
Target:  5'- cGGCGGcGGGCCccugcguucguUGCUGCcgcgcCCCCGGUu -3'
miRNA:   3'- -CCGUCuUCUGGc----------ACGACGu----GGGGCCA- -5'
5199 3' -59 NC_001798.1 + 28691 0.67 0.703378
Target:  5'- aGGCGGucaucGGACCGUGcCUGgAgCCCGa- -3'
miRNA:   3'- -CCGUCu----UCUGGCAC-GACgUgGGGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.