miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 24127 0.66 0.761018
Target:  5'- cGGCAGcguggcgcGGGCCGUGCccCACCUgGGg -3'
miRNA:   3'- -CCGUCu-------UCUGGCACGacGUGGGgCCa -5'
5199 3' -59 NC_001798.1 + 132146 0.66 0.761018
Target:  5'- cGCcGggGGCCGgcggGCgggGCGCCCCccccGGa -3'
miRNA:   3'- cCGuCuuCUGGCa---CGa--CGUGGGG----CCa -5'
5199 3' -59 NC_001798.1 + 29980 0.66 0.760084
Target:  5'- cGGgGGAcccccguGGGCCGUGCgccGCcCCCCGa- -3'
miRNA:   3'- -CCgUCU-------UCUGGCACGa--CGuGGGGCca -5'
5199 3' -59 NC_001798.1 + 87886 0.66 0.760084
Target:  5'- aGGUgcgAGAAGuaauaguCCGUGUUGagcggaaCGCCCCGGg -3'
miRNA:   3'- -CCG---UCUUCu------GGCACGAC-------GUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 105612 0.67 0.751635
Target:  5'- gGGCGGcGGGCgG-GCgacgacgGCGCUCCGGg -3'
miRNA:   3'- -CCGUCuUCUGgCaCGa------CGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 8948 0.67 0.751635
Target:  5'- cGGCGGGGuGGCCGccgGaccuuuaUGCGCCUCGGc -3'
miRNA:   3'- -CCGUCUU-CUGGCa--Cg------ACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 68355 0.67 0.751635
Target:  5'- aGGCGGcguaugugcAGGugCGUGCgguaggGCGCCCCc-- -3'
miRNA:   3'- -CCGUC---------UUCugGCACGa-----CGUGGGGcca -5'
5199 3' -59 NC_001798.1 + 68926 0.67 0.742151
Target:  5'- aGGCauucGGAAaACCGguccaGCcGCGCCCCGGc -3'
miRNA:   3'- -CCG----UCUUcUGGCa----CGaCGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 71407 0.67 0.742151
Target:  5'- uGGCGGggGugcCCGcGCggacGCcCCCCGGc -3'
miRNA:   3'- -CCGUCuuCu--GGCaCGa---CGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 77537 0.67 0.742151
Target:  5'- gGGUucGggGGCC-UGCUGCACgCCGa- -3'
miRNA:   3'- -CCGu-CuuCUGGcACGACGUGgGGCca -5'
5199 3' -59 NC_001798.1 + 79475 0.67 0.742151
Target:  5'- gGGCcacGAGGucgacCCGcagcUGCUGCGCCgCCGGg -3'
miRNA:   3'- -CCGu--CUUCu----GGC----ACGACGUGG-GGCCa -5'
5199 3' -59 NC_001798.1 + 153244 0.67 0.732574
Target:  5'- cGGCGGAGGACCc-GC-GCGCCgCCGc- -3'
miRNA:   3'- -CCGUCUUCUGGcaCGaCGUGG-GGCca -5'
5199 3' -59 NC_001798.1 + 149641 0.67 0.732574
Target:  5'- gGGCAGGuagcgcgugAGGCCGgGCgccggGUcgcggGCCCCGGg -3'
miRNA:   3'- -CCGUCU---------UCUGGCaCGa----CG-----UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 14084 0.67 0.732574
Target:  5'- ------cGACCGcuccauagcUGCUGUACCCCGGg -3'
miRNA:   3'- ccgucuuCUGGC---------ACGACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 35434 0.67 0.722914
Target:  5'- cGGCGGGAGGCgUGggccGCUgGCGCCgCGGc -3'
miRNA:   3'- -CCGUCUUCUG-GCa---CGA-CGUGGgGCCa -5'
5199 3' -59 NC_001798.1 + 154284 0.67 0.722914
Target:  5'- cGCAGcccGGGCCGUGUUGCggGCCCUcuuaaGGg -3'
miRNA:   3'- cCGUCu--UCUGGCACGACG--UGGGG-----CCa -5'
5199 3' -59 NC_001798.1 + 116520 0.67 0.703378
Target:  5'- cGCGGggG--CGcUGCUGCACCgCGGg -3'
miRNA:   3'- cCGUCuuCugGC-ACGACGUGGgGCCa -5'
5199 3' -59 NC_001798.1 + 28691 0.67 0.703378
Target:  5'- aGGCGGucaucGGACCGUGcCUGgAgCCCGa- -3'
miRNA:   3'- -CCGUCu----UCUGGCAC-GACgUgGGGCca -5'
5199 3' -59 NC_001798.1 + 70328 0.67 0.703378
Target:  5'- cGGCGGAGGcgcgGgCGUGCUgGCACCCgcuccUGGa -3'
miRNA:   3'- -CCGUCUUC----UgGCACGA-CGUGGG-----GCCa -5'
5199 3' -59 NC_001798.1 + 35195 0.68 0.693519
Target:  5'- cGGCGGcGGGCCccugcguucguUGCUGCcgcgcCCCCGGUu -3'
miRNA:   3'- -CCGUCuUCUGGc----------ACGACGu----GGGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.