miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 3' -59 NC_001798.1 + 154284 0.67 0.722914
Target:  5'- cGCAGcccGGGCCGUGUUGCggGCCCUcuuaaGGg -3'
miRNA:   3'- cCGUCu--UCUGGCACGACG--UGGGG-----CCa -5'
5199 3' -59 NC_001798.1 + 154110 0.66 0.797366
Target:  5'- cGGCGccGggGACCccgGCggcggGgACCCCGGc -3'
miRNA:   3'- -CCGU--CuuCUGGca-CGa----CgUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 153244 0.67 0.732574
Target:  5'- cGGCGGAGGACCc-GC-GCGCCgCCGc- -3'
miRNA:   3'- -CCGUCUUCUGGcaCGaCGUGG-GGCca -5'
5199 3' -59 NC_001798.1 + 151391 0.69 0.623587
Target:  5'- -aCAGggGACaCGUGUUGCGCaaCGGa -3'
miRNA:   3'- ccGUCuuCUG-GCACGACGUGggGCCa -5'
5199 3' -59 NC_001798.1 + 149641 0.67 0.732574
Target:  5'- gGGCAGGuagcgcgugAGGCCGgGCgccggGUcgcggGCCCCGGg -3'
miRNA:   3'- -CCGUCU---------UCUGGCaCGa----CG-----UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 147022 0.68 0.643651
Target:  5'- gGGCGGGccggggcuuGGCCGccgaGgUGCGCCCCGGc -3'
miRNA:   3'- -CCGUCUu--------CUGGCa---CgACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 142424 0.66 0.770291
Target:  5'- cGGCAuccuGACgGUGgUGUggACCCCGGa -3'
miRNA:   3'- -CCGUcuu-CUGgCACgACG--UGGGGCCa -5'
5199 3' -59 NC_001798.1 + 135784 0.73 0.389055
Target:  5'- cGGCccgccggAGGAGGCCGUGUgcGCGgCCCGGg -3'
miRNA:   3'- -CCG-------UCUUCUGGCACGa-CGUgGGGCCa -5'
5199 3' -59 NC_001798.1 + 135310 0.69 0.613561
Target:  5'- gGGCcc-GGGCCGUGCUGgaGCgCCUGGUg -3'
miRNA:   3'- -CCGucuUCUGGCACGACg-UG-GGGCCA- -5'
5199 3' -59 NC_001798.1 + 135218 0.71 0.486734
Target:  5'- gGGCcucgGGGAGGCCGgGCUGCcggaaGCCCgGGg -3'
miRNA:   3'- -CCG----UCUUCUGGCaCGACG-----UGGGgCCa -5'
5199 3' -59 NC_001798.1 + 132296 0.68 0.650668
Target:  5'- cGGCAGuuuacGGACCGcgUGCUGCugcuccacucgcucACCCCGc- -3'
miRNA:   3'- -CCGUCu----UCUGGC--ACGACG--------------UGGGGCca -5'
5199 3' -59 NC_001798.1 + 132146 0.66 0.761018
Target:  5'- cGCcGggGGCCGgcggGCgggGCGCCCCccccGGa -3'
miRNA:   3'- cCGuCuuCUGGCa---CGa--CGUGGGG----CCa -5'
5199 3' -59 NC_001798.1 + 124780 0.66 0.779446
Target:  5'- uGCGGAuguGGGCCGUGUaGCcuaucuugaucCCCCGGa -3'
miRNA:   3'- cCGUCU---UCUGGCACGaCGu----------GGGGCCa -5'
5199 3' -59 NC_001798.1 + 124636 0.68 0.653674
Target:  5'- uGGCuGGAGGCaaacacgauCGUGCUGCGCgagccgUCCGGg -3'
miRNA:   3'- -CCGuCUUCUG---------GCACGACGUG------GGGCCa -5'
5199 3' -59 NC_001798.1 + 124077 0.7 0.544126
Target:  5'- cGGgAGGAGGCgGcGcCUGCGCCCCGa- -3'
miRNA:   3'- -CCgUCUUCUGgCaC-GACGUGGGGCca -5'
5199 3' -59 NC_001798.1 + 123909 0.71 0.524714
Target:  5'- cGGCccccGAauccGGGgCGUGCUGUGCCCUGGg -3'
miRNA:   3'- -CCGu---CU----UCUgGCACGACGUGGGGCCa -5'
5199 3' -59 NC_001798.1 + 122110 0.66 0.806115
Target:  5'- cGGCGGggGgcgcuuugccaGCCGggGggGC-CCCCGGg -3'
miRNA:   3'- -CCGUCuuC-----------UGGCa-CgaCGuGGGGCCa -5'
5199 3' -59 NC_001798.1 + 121795 0.66 0.770291
Target:  5'- gGGCGGGgccGGGCCG-GCcguugucgGCACCCCa-- -3'
miRNA:   3'- -CCGUCU---UCUGGCaCGa-------CGUGGGGcca -5'
5199 3' -59 NC_001798.1 + 116520 0.67 0.703378
Target:  5'- cGCGGggG--CGcUGCUGCACCgCGGg -3'
miRNA:   3'- cCGUCuuCugGC-ACGACGUGGgGCCa -5'
5199 3' -59 NC_001798.1 + 115316 0.66 0.806115
Target:  5'- cGCcGggGACCugGUGCccGC-CCCCGGc -3'
miRNA:   3'- cCGuCuuCUGG--CACGa-CGuGGGGCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.