miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 146082 0.66 0.997361
Target:  5'- aGGGGUC-CGGgGCGAGGCGGGc--- -3'
miRNA:   3'- aCUCCGGcGCCgUGUUUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 145821 0.7 0.96683
Target:  5'- cGGGcGCgGCGGCGguCGGggUGGGAGUGg -3'
miRNA:   3'- aCUC-CGgCGCCGU--GUUuuGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 141580 0.7 0.96683
Target:  5'- cUGcGGCgGCGGCACGcGACGGc---- -3'
miRNA:   3'- -ACuCCGgCGCCGUGUuUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 140101 0.68 0.988107
Target:  5'- cGAGGCCgggcuccugggGCGGCACcuacucACGAccGUGg -3'
miRNA:   3'- aCUCCGG-----------CGCCGUGuuu---UGCUuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 139937 0.73 0.874026
Target:  5'- -cGGGCCcugGCGGCGCAcggGGGCGAAGAc- -3'
miRNA:   3'- acUCCGG---CGCCGUGU---UUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 139063 0.71 0.94261
Target:  5'- gGAGGCCGCGGgccacCACGugGCGGc---- -3'
miRNA:   3'- aCUCCGGCGCC-----GUGUuuUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 138908 0.7 0.959747
Target:  5'- -uGGGCCGCccGGCGCAAAGCa------ -3'
miRNA:   3'- acUCCGGCG--CCGUGUUUUGcuuuuac -5'
5200 5' -49.6 NC_001798.1 + 138503 0.75 0.805919
Target:  5'- gGAGGgCGUGGCACGcGACGAu---- -3'
miRNA:   3'- aCUCCgGCGCCGUGUuUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 136943 0.7 0.951687
Target:  5'- gGAGGuCCGUGGgGCGAAACaaGGAGAg- -3'
miRNA:   3'- aCUCC-GGCGCCgUGUUUUG--CUUUUac -5'
5200 5' -49.6 NC_001798.1 + 135796 0.72 0.92132
Target:  5'- gGAGGCCGUGuGCGCGGccCGggGcgucAUGg -3'
miRNA:   3'- aCUCCGGCGC-CGUGUUuuGCuuU----UAC- -5'
5200 5' -49.6 NC_001798.1 + 134079 0.77 0.705868
Target:  5'- gGAGGCgCGCGcGCGCuucGCGGAGGUGu -3'
miRNA:   3'- aCUCCG-GCGC-CGUGuuuUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 131390 0.67 0.990893
Target:  5'- gGGGGCC-CGGCGuccCAu--CGggGAUGa -3'
miRNA:   3'- aCUCCGGcGCCGU---GUuuuGCuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 130879 0.66 0.996869
Target:  5'- cGAGGCaCGCaaaGUGCAGGACGuAGAUa -3'
miRNA:   3'- aCUCCG-GCGc--CGUGUUUUGCuUUUAc -5'
5200 5' -49.6 NC_001798.1 + 126095 0.75 0.796527
Target:  5'- aGAGGCCGCGGCGaac-GCGucucuGUGg -3'
miRNA:   3'- aCUCCGGCGCCGUguuuUGCuuu--UAC- -5'
5200 5' -49.6 NC_001798.1 + 124442 0.66 0.995655
Target:  5'- -cGGGCCGUGGC-CAGAGCc------ -3'
miRNA:   3'- acUCCGGCGCCGuGUUUUGcuuuuac -5'
5200 5' -49.6 NC_001798.1 + 121697 0.73 0.888806
Target:  5'- gGGGGCCGCGGCucccgccgcCGcGACGGAGGc- -3'
miRNA:   3'- aCUCCGGCGCCGu--------GUuUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 120885 0.66 0.997361
Target:  5'- --uGGCCuuccCGGUguuggucgACGAGACGAAGAUGa -3'
miRNA:   3'- acuCCGGc---GCCG--------UGUUUUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 120373 0.67 0.994917
Target:  5'- cGAGGCUGUG-CACGAcgcAGCGGGcGAUGu -3'
miRNA:   3'- aCUCCGGCGCcGUGUU---UUGCUU-UUAC- -5'
5200 5' -49.6 NC_001798.1 + 118614 0.71 0.927038
Target:  5'- cGAuGCCGCGGCGCugcagcgguGCGAGGGUc -3'
miRNA:   3'- aCUcCGGCGCCGUGuuu------UGCUUUUAc -5'
5200 5' -49.6 NC_001798.1 + 115502 0.7 0.963408
Target:  5'- cGAGGCCGCGaauccGUACGGGGCGu----- -3'
miRNA:   3'- aCUCCGGCGC-----CGUGUUUUGCuuuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.