Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 154278 | 0.7 | 0.482852 |
Target: 5'- gGC-GUgCGCAGCCCGGGCCgUguUg -3' miRNA: 3'- gCGuCAgGCGUUGGGCCCGGgAguAg -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 153286 | 0.7 | 0.492112 |
Target: 5'- cCGCgGGUCCGCcgucuucgugGGCCCGGGCUCgggC-UCg -3' miRNA: 3'- -GCG-UCAGGCG----------UUGGGCCCGGGa--GuAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 153220 | 0.66 | 0.707083 |
Target: 5'- cCGC---CCGaCGGCCCGGGCCCgCGg- -3' miRNA: 3'- -GCGucaGGC-GUUGGGCCCGGGaGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 153087 | 0.72 | 0.387268 |
Target: 5'- gGCGGg--GCGGCgCCGGGCCCUCGc- -3' miRNA: 3'- gCGUCaggCGUUG-GGCCCGGGAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 150358 | 0.67 | 0.666818 |
Target: 5'- uGCGcGUCCaccggcacggcggGCGGCgCGGGCCCggccgCGUCc -3' miRNA: 3'- gCGU-CAGG-------------CGUUGgGCCCGGGa----GUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 150221 | 0.67 | 0.677687 |
Target: 5'- uGguG-CCGCGGgggacCCCGGGUCCUCc-- -3' miRNA: 3'- gCguCaGGCGUU-----GGGCCCGGGAGuag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 150038 | 0.67 | 0.647973 |
Target: 5'- cCG-AGUCCGgGGCCCGGcgcggcgccGCCCUCu-- -3' miRNA: 3'- -GCgUCAGGCgUUGGGCC---------CGGGAGuag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 149472 | 0.68 | 0.598308 |
Target: 5'- aCGCGGgggCCGCGGCCCGcagcaGGUCCgccaCGUUc -3' miRNA: 3'- -GCGUCa--GGCGUUGGGC-----CCGGGa---GUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 147207 | 0.76 | 0.215394 |
Target: 5'- gGCGGUCCG--GCCCGGGCCCcCGg- -3' miRNA: 3'- gCGUCAGGCguUGGGCCCGGGaGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 138151 | 0.7 | 0.464592 |
Target: 5'- uGCGGUCgCGCc-CCCGGGUCCUgGg- -3' miRNA: 3'- gCGUCAG-GCGuuGGGCCCGGGAgUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 135799 | 0.69 | 0.54922 |
Target: 5'- gGCcguGUgCGCGGCCCGGGgCgUCAUg -3' miRNA: 3'- gCGu--CAgGCGUUGGGCCCgGgAGUAg -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 135499 | 0.68 | 0.622127 |
Target: 5'- aCGCGGacgCCGCGcacggcGCgauccaggacgcccgCCGGGCCCUCGa- -3' miRNA: 3'- -GCGUCa--GGCGU------UG---------------GGCCCGGGAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 135440 | 0.66 | 0.726395 |
Target: 5'- uGCGGUCUGCGGCggcaCCGGGgCUgCGUUc -3' miRNA: 3'- gCGUCAGGCGUUG----GGCCCgGGaGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 131332 | 0.68 | 0.568735 |
Target: 5'- aCGCcGcCCGCGcCCCGGGCgCgaCGUCg -3' miRNA: 3'- -GCGuCaGGCGUuGGGCCCG-GgaGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 127959 | 0.66 | 0.73594 |
Target: 5'- gGCccGGcCCGCGuCCCcGGCCCUC-UCu -3' miRNA: 3'- gCG--UCaGGCGUuGGGcCCGGGAGuAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 124431 | 0.75 | 0.266097 |
Target: 5'- cCGCGGUCgCGCGGgCCGuGGCcagagCCUCAUCg -3' miRNA: 3'- -GCGUCAG-GCGUUgGGC-CCG-----GGAGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 123453 | 0.66 | 0.726395 |
Target: 5'- gCGCGcGcCCcCGACCCGGGgCCCgaagccgaccUCGUCg -3' miRNA: 3'- -GCGU-CaGGcGUUGGGCCC-GGG----------AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 122595 | 0.7 | 0.455598 |
Target: 5'- uCGCGuGUCUGCGGgcCCUGGGCCaCUCuAUCc -3' miRNA: 3'- -GCGU-CAGGCGUU--GGGCCCGG-GAG-UAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 118535 | 0.72 | 0.355727 |
Target: 5'- cCGguGUCuCGCGGCCCGGcGCCaUgAUCa -3' miRNA: 3'- -GCguCAG-GCGUUGGGCC-CGGgAgUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 117394 | 0.67 | 0.677687 |
Target: 5'- gGCAccGUCCGCAACCCcguuacggacauGGGCaaCCUCc-- -3' miRNA: 3'- gCGU--CAGGCGUUGGG------------CCCG--GGAGuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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