miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5205 5' -63.5 NC_001798.1 + 154287 0.66 0.529246
Target:  5'- -aGCCCGGGcCGUguugCGgGCCCucuuaAGggGCGg -3'
miRNA:   3'- caCGGGCCC-GCG----GUgCGGG-----UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 154096 0.66 0.548341
Target:  5'- -cGCCgGGGCGCggccgGCGCCgGGGaccccGGCGg -3'
miRNA:   3'- caCGGgCCCGCGg----UGCGGgUCU-----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 154048 0.67 0.508532
Target:  5'- -cGCCgGGGCGCggcacggcuggaGCGCCgGGgcGCGg -3'
miRNA:   3'- caCGGgCCCGCGg-----------UGCGGgUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 153935 0.71 0.28018
Target:  5'- -cGCCUGGGgcaccagcaGCCAgCGCCgCAGGAGCGa -3'
miRNA:   3'- caCGGGCCCg--------CGGU-GCGG-GUCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 153229 0.66 0.567647
Target:  5'- -gGCCCGGGC-CCGCGgCggCGGAGGa- -3'
miRNA:   3'- caCGGGCCCGcGGUGCgG--GUCUUCgu -5'
5205 5' -63.5 NC_001798.1 + 153054 0.67 0.501083
Target:  5'- uUGgCC-GGCGCCGCcCCCuGggGCGg -3'
miRNA:   3'- cACgGGcCCGCGGUGcGGGuCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 152243 0.74 0.197552
Target:  5'- -cGCUCGGG-GCCGgggucCGCCCGGGAGCu -3'
miRNA:   3'- caCGGGCCCgCGGU-----GCGGGUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 151668 0.67 0.501083
Target:  5'- cGUGUCCGuGCuGCC-CGCCuCGGAGGUg -3'
miRNA:   3'- -CACGGGCcCG-CGGuGCGG-GUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 151597 0.7 0.341802
Target:  5'- cUGCCCuGGCGCU-CGgCCGGggGCc -3'
miRNA:   3'- cACGGGcCCGCGGuGCgGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 150388 0.68 0.404326
Target:  5'- -gGCCCGGccGCGuCCGCGCUCgcagacaccacGGggGCGg -3'
miRNA:   3'- caCGGGCC--CGC-GGUGCGGG-----------UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 150048 0.67 0.481767
Target:  5'- -gGCCCGGcgcgGCGCCGCccucuugGCCCccacccccugGGggGCGa -3'
miRNA:   3'- caCGGGCC----CGCGGUG-------CGGG----------UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 149973 0.69 0.38803
Target:  5'- -cGCCgacggGGGCGCgGCGCCCGcggacgccGggGCGa -3'
miRNA:   3'- caCGGg----CCCGCGgUGCGGGU--------CuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 149657 0.66 0.567647
Target:  5'- -aGgCCGGGCGCCGgGUCgCGGGccccgGGCu -3'
miRNA:   3'- caCgGGCCCGCGGUgCGG-GUCU-----UCGu -5'
5205 5' -63.5 NC_001798.1 + 146712 0.71 0.273906
Target:  5'- aGUGCUcugcgguugCGGGCGCCGUGCCCGGAgauccauuaAGCc -3'
miRNA:   3'- -CACGG---------GCCCGCGGUGCGGGUCU---------UCGu -5'
5205 5' -63.5 NC_001798.1 + 145652 0.68 0.421047
Target:  5'- -gGCCCcGGCGCCGCGCagaacacaCAGAcgaacacacgguGGCGa -3'
miRNA:   3'- caCGGGcCCGCGGUGCGg-------GUCU------------UCGU- -5'
5205 5' -63.5 NC_001798.1 + 145502 0.68 0.428707
Target:  5'- -cGCCCGGccgccgcGCGCCccCGCCCGGccGCc -3'
miRNA:   3'- caCGGGCC-------CGCGGu-GCGGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 145460 0.68 0.428707
Target:  5'- -cGCCCGGccgccgcGCGCCccCGCCCGGccGCc -3'
miRNA:   3'- caCGGGCC-------CGCGGu-GCGGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 145418 0.68 0.428707
Target:  5'- -cGCCCGGccgccgcGCGCCccCGCCCGGccGCc -3'
miRNA:   3'- caCGGGCC-------CGCGGu-GCGGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 143813 0.71 0.286567
Target:  5'- -gGCCCGGGCGgCGCGCggCCAGccGUu -3'
miRNA:   3'- caCGGGCCCGCgGUGCG--GGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 135311 0.69 0.396124
Target:  5'- -gGCCCGGGCcgugcuggagcGCCugGUgCCGGAcGCGu -3'
miRNA:   3'- caCGGGCCCG-----------CGGugCG-GGUCUuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.