miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 3' -61.1 NC_001798.1 + 120564 0.69 0.523086
Target:  5'- aGGCCgCUGUuGGUGGUGGuGGAGg--- -3'
miRNA:   3'- -CCGG-GGCAcCCGCCACCuCCUCaagg -5'
5214 3' -61.1 NC_001798.1 + 100981 0.69 0.532487
Target:  5'- -aCCCCGggggcgUGGGCGG-GGAGGGGg--- -3'
miRNA:   3'- ccGGGGC------ACCCGCCaCCUCCUCaagg -5'
5214 3' -61.1 NC_001798.1 + 74345 0.69 0.541948
Target:  5'- cGCCCCaaGGuGCGGUGGGcGGGcgCCa -3'
miRNA:   3'- cCGGGGcaCC-CGCCACCUcCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 36079 0.69 0.542897
Target:  5'- gGGCgCgGgguaggugggugggcGGGUGGUGGGGGGGggCCc -3'
miRNA:   3'- -CCGgGgCa--------------CCCGCCACCUCCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 33379 0.69 0.551465
Target:  5'- -aCCCUGgGGGUGGUGGgcAGGAGUgggagggcgCCu -3'
miRNA:   3'- ccGGGGCaCCCGCCACC--UCCUCAa--------GG- -5'
5214 3' -61.1 NC_001798.1 + 31247 0.69 0.551465
Target:  5'- cGCCCCGUugcGGGCGG-GGGuGGGaUCUg -3'
miRNA:   3'- cCGGGGCA---CCCGCCaCCUcCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 85987 0.69 0.561031
Target:  5'- aGGCCgCCGccgGGGCGcUGGcgcagGGGGGUgagCCg -3'
miRNA:   3'- -CCGG-GGCa--CCCGCcACC-----UCCUCAa--GG- -5'
5214 3' -61.1 NC_001798.1 + 31141 0.69 0.570643
Target:  5'- cGCCCCGgcgcggGGGCGGcGGugcGGGGgcgacCCg -3'
miRNA:   3'- cCGGGGCa-----CCCGCCaCCu--CCUCaa---GG- -5'
5214 3' -61.1 NC_001798.1 + 15331 0.68 0.579327
Target:  5'- gGGCCCCGgcgcgGuagcggggggcgaGGCGGUGaGGGGGGaaucggCCg -3'
miRNA:   3'- -CCGGGGCa----C-------------CCGCCAC-CUCCUCaa----GG- -5'
5214 3' -61.1 NC_001798.1 + 3001 0.68 0.580294
Target:  5'- gGGCCCCGggcgcggGGGCGcGgcgGGccGGGcUCCg -3'
miRNA:   3'- -CCGGGGCa------CCCGC-Ca--CCucCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 32897 0.68 0.589009
Target:  5'- cGCCUCGgGGGCagggggaGGUGGGGGGGg--- -3'
miRNA:   3'- cCGGGGCaCCCG-------CCACCUCCUCaagg -5'
5214 3' -61.1 NC_001798.1 + 93313 0.68 0.599692
Target:  5'- gGGCCUCGUGGGCGccau-GGuGUUCa -3'
miRNA:   3'- -CCGGGGCACCCGCcaccuCCuCAAGg -5'
5214 3' -61.1 NC_001798.1 + 102637 0.68 0.599692
Target:  5'- -cUCCCGUcgccGGGCGGcGGAGGGG--CCg -3'
miRNA:   3'- ccGGGGCA----CCCGCCaCCUCCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 27538 0.68 0.599692
Target:  5'- aGCCCCGcGGcgcGCGGggGGAGGGGcggcgCCc -3'
miRNA:   3'- cCGGGGCaCC---CGCCa-CCUCCUCaa---GG- -5'
5214 3' -61.1 NC_001798.1 + 53629 0.68 0.606504
Target:  5'- gGGCCgCCGcGGccaaguacgccgccGCGGUGGcGGGGUUgCg -3'
miRNA:   3'- -CCGG-GGCaCC--------------CGCCACCuCCUCAAgG- -5'
5214 3' -61.1 NC_001798.1 + 12698 0.68 0.606504
Target:  5'- aGGCCCgGguugcuggGGGCGGcGGGGGcGUggugcggcgcgacgUCCu -3'
miRNA:   3'- -CCGGGgCa-------CCCGCCaCCUCCuCA--------------AGG- -5'
5214 3' -61.1 NC_001798.1 + 36847 0.68 0.619176
Target:  5'- cGGCUgUGUGGuG-GGUGGGGGAGgcaCg -3'
miRNA:   3'- -CCGGgGCACC-CgCCACCUCCUCaagG- -5'
5214 3' -61.1 NC_001798.1 + 150571 0.68 0.626983
Target:  5'- gGGCCCgCG-GGGCGGcgcggagacggcGGGGGAGagUCg -3'
miRNA:   3'- -CCGGG-GCaCCCGCCa-----------CCUCCUCa-AGg -5'
5214 3' -61.1 NC_001798.1 + 102014 0.68 0.628935
Target:  5'- cGGCCuuGgcgGGGUagcggGGUGGuugggcGGGGGUcUCCg -3'
miRNA:   3'- -CCGGggCa--CCCG-----CCACC------UCCUCA-AGG- -5'
5214 3' -61.1 NC_001798.1 + 34742 0.68 0.628935
Target:  5'- gGGCCCgGgagcgGGGCGGcccgGGAGGGa---- -3'
miRNA:   3'- -CCGGGgCa----CCCGCCa---CCUCCUcaagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.