miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 3' -61.1 NC_001798.1 + 153228 0.66 0.716003
Target:  5'- cGGCCCgGgcccGcGGCGGcGGAGGAc--CCg -3'
miRNA:   3'- -CCGGGgCa---C-CCGCCaCCUCCUcaaGG- -5'
5214 3' -61.1 NC_001798.1 + 152513 0.78 0.174132
Target:  5'- cGCCCCGgcggGGGCGGagGGAGGGaaUCCc -3'
miRNA:   3'- cCGGGGCa---CCCGCCa-CCUCCUcaAGG- -5'
5214 3' -61.1 NC_001798.1 + 150571 0.68 0.626983
Target:  5'- gGGCCCgCG-GGGCGGcgcggagacggcGGGGGAGagUCg -3'
miRNA:   3'- -CCGGG-GCaCCCGCCa-----------CCUCCUCa-AGg -5'
5214 3' -61.1 NC_001798.1 + 147498 0.66 0.744132
Target:  5'- aGGCUCCG-GGGgGG-GGGGGcg--CCu -3'
miRNA:   3'- -CCGGGGCaCCCgCCaCCUCCucaaGG- -5'
5214 3' -61.1 NC_001798.1 + 137461 0.67 0.638697
Target:  5'- cGCCCgGaaaucGGCGGggguuggGGAGGGGggCCg -3'
miRNA:   3'- cCGGGgCac---CCGCCa------CCUCCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 129294 0.66 0.706486
Target:  5'- aGGCaCCgCGcgGGcGCGGaGGAGGGcgugacGUUCCg -3'
miRNA:   3'- -CCG-GG-GCa-CC-CGCCaCCUCCU------CAAGG- -5'
5214 3' -61.1 NC_001798.1 + 129044 0.72 0.360598
Target:  5'- cGCCCCGgaucGGGCGcUGGuGGAGUUa- -3'
miRNA:   3'- cCGGGGCa---CCCGCcACCuCCUCAAgg -5'
5214 3' -61.1 NC_001798.1 + 128854 0.66 0.700748
Target:  5'- cGGCCuCCGcguacgaggaccugaUGGcGCGGcgaucgccGGAGGcGUUCCg -3'
miRNA:   3'- -CCGG-GGC---------------ACC-CGCCa-------CCUCCuCAAGG- -5'
5214 3' -61.1 NC_001798.1 + 121860 0.66 0.725455
Target:  5'- cGGCCCCGgGaGGCGacacggccaccGcGGAGGAcGUgUCCa -3'
miRNA:   3'- -CCGGGGCaC-CCGC-----------CaCCUCCU-CA-AGG- -5'
5214 3' -61.1 NC_001798.1 + 120564 0.69 0.523086
Target:  5'- aGGCCgCUGUuGGUGGUGGuGGAGg--- -3'
miRNA:   3'- -CCGG-GGCAcCCGCCACCuCCUCaagg -5'
5214 3' -61.1 NC_001798.1 + 113131 0.72 0.375995
Target:  5'- aGGCCgCGUGuGGCGG-GGAGGAcGgagaacugCCg -3'
miRNA:   3'- -CCGGgGCAC-CCGCCaCCUCCU-Caa------GG- -5'
5214 3' -61.1 NC_001798.1 + 108109 0.75 0.253613
Target:  5'- gGGCCCCGgucugUGGGUGGUGauGGGGG-UCCu -3'
miRNA:   3'- -CCGGGGC-----ACCCGCCACc-UCCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 104999 0.69 0.523086
Target:  5'- cGGCgCUGcGGGUGGUcaGGGGGAagUCCg -3'
miRNA:   3'- -CCGgGGCaCCCGCCA--CCUCCUcaAGG- -5'
5214 3' -61.1 NC_001798.1 + 102637 0.68 0.599692
Target:  5'- -cUCCCGUcgccGGGCGGcGGAGGGG--CCg -3'
miRNA:   3'- ccGGGGCA----CCCGCCaCCUCCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 102014 0.68 0.628935
Target:  5'- cGGCCuuGgcgGGGUagcggGGUGGuugggcGGGGGUcUCCg -3'
miRNA:   3'- -CCGGggCa--CCCG-----CCACC------UCCUCA-AGG- -5'
5214 3' -61.1 NC_001798.1 + 101853 0.72 0.408092
Target:  5'- gGGUCCCG-GcGGCGGcGGAGGGGggUg -3'
miRNA:   3'- -CCGGGGCaC-CCGCCaCCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 100981 0.69 0.532487
Target:  5'- -aCCCCGggggcgUGGGCGG-GGAGGGGg--- -3'
miRNA:   3'- ccGGGGC------ACCCGCCaCCUCCUCaagg -5'
5214 3' -61.1 NC_001798.1 + 97586 0.66 0.716003
Target:  5'- cGGCCCCGagccagGGGCGcagGGGccGGAGagCUg -3'
miRNA:   3'- -CCGGGGCa-----CCCGCca-CCU--CCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 95002 0.75 0.265418
Target:  5'- gGGCCCCGcaGGGCGGcgcgggccUGGAGGccGGggCCc -3'
miRNA:   3'- -CCGGGGCa-CCCGCC--------ACCUCC--UCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 93313 0.68 0.599692
Target:  5'- gGGCCUCGUGGGCGccau-GGuGUUCa -3'
miRNA:   3'- -CCGGGGCACCCGCcaccuCCuCAAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.