Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5216 | 3' | -57.7 | NC_001798.1 | + | 77821 | 0.99 | 0.008868 |
Target: 5'- cUACAACCCCCGGGACUUCCGCAAcGCGc -3' miRNA: 3'- -AUGUUGGGGGCCCUGAAGGCGUU-CGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 4137 | 0.79 | 0.201471 |
Target: 5'- cGCcGCCCCCGGGGCccUCGCGGGCa -3' miRNA: 3'- aUGuUGGGGGCCCUGaaGGCGUUCGc -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 2549 | 0.76 | 0.288491 |
Target: 5'- cGCGGCCCCCgcgggaGGGGCggCCGCGGGgCGg -3' miRNA: 3'- aUGUUGGGGG------CCCUGaaGGCGUUC-GC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 104344 | 0.76 | 0.313345 |
Target: 5'- gACGGCUCCCGGGAUcagcaugcccagCUGCAGGCGg -3' miRNA: 3'- aUGUUGGGGGCCCUGaa----------GGCGUUCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 88976 | 0.75 | 0.337523 |
Target: 5'- gACGGCCUCCucgggggugcucuGGGGgaUCCGCGAGCGg -3' miRNA: 3'- aUGUUGGGGG-------------CCCUgaAGGCGUUCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 31634 | 0.75 | 0.338277 |
Target: 5'- cGCcGCCCCCGuGGugU-CUGCGAGCGc -3' miRNA: 3'- aUGuUGGGGGC-CCugAaGGCGUUCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 108681 | 0.75 | 0.345879 |
Target: 5'- cGCcGCCCCCGGGGCcgcCCGCGGGg- -3' miRNA: 3'- aUGuUGGGGGCCCUGaa-GGCGUUCgc -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 48359 | 0.75 | 0.361448 |
Target: 5'- cGCGGCCgCCCGGGGCcgccCCGCGGGgCGu -3' miRNA: 3'- aUGUUGG-GGGCCCUGaa--GGCGUUC-GC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 122135 | 0.74 | 0.385701 |
Target: 5'- gGgGGCCCCCGGG----CCGCGGGCGa -3' miRNA: 3'- aUgUUGGGGGCCCugaaGGCGUUCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 60920 | 0.73 | 0.43642 |
Target: 5'- cGCGacGCUCCCGGGACaaUCCGCAgagacgaGGCGc -3' miRNA: 3'- aUGU--UGGGGGCCCUGa-AGGCGU-------UCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 27268 | 0.72 | 0.486984 |
Target: 5'- cGCAGCCCCgUggcgcgcgggggggaGGGGCUgCCGCGAGCu -3' miRNA: 3'- aUGUUGGGG-G---------------CCCUGAaGGCGUUCGc -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 134155 | 0.72 | 0.49267 |
Target: 5'- -uCGGCCCCCGGGGCcgUCGC-GGCc -3' miRNA: 3'- auGUUGGGGGCCCUGaaGGCGuUCGc -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 27213 | 0.72 | 0.49267 |
Target: 5'- --aAGCCCCCGGGGCggggCGCGGGgGa -3' miRNA: 3'- augUUGGGGGCCCUGaag-GCGUUCgC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 135488 | 0.71 | 0.551034 |
Target: 5'- --gGACCCCgGGGACgcggacgCCGCGcacGGCGc -3' miRNA: 3'- augUUGGGGgCCCUGaa-----GGCGU---UCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 117663 | 0.71 | 0.570982 |
Target: 5'- cUGCAACCCgCgGGGACgcgCgGCcGGCGg -3' miRNA: 3'- -AUGUUGGG-GgCCCUGaa-GgCGuUCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 23827 | 0.71 | 0.560984 |
Target: 5'- ---cGCCCCCGGGGCgcgugCUGUAcGGCGg -3' miRNA: 3'- auguUGGGGGCCCUGaa---GGCGU-UCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 112037 | 0.71 | 0.581022 |
Target: 5'- aGC-ACCCCCGGG-CUggUUCGCA-GCGa -3' miRNA: 3'- aUGuUGGGGGCCCuGA--AGGCGUuCGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 23629 | 0.71 | 0.570982 |
Target: 5'- --gGACCCCCGcGGCgaCCGCGGGCc -3' miRNA: 3'- augUUGGGGGCcCUGaaGGCGUUCGc -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 51431 | 0.71 | 0.531305 |
Target: 5'- gACGGCCCCgGGGcgcggcCUUCCGCGA-CGg -3' miRNA: 3'- aUGUUGGGGgCCCu-----GAAGGCGUUcGC- -5' |
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5216 | 3' | -57.7 | NC_001798.1 | + | 135917 | 0.7 | 0.601205 |
Target: 5'- gACGACCCCCugccccaaacGGcCUUCCGCGgaGGCGc -3' miRNA: 3'- aUGUUGGGGGc---------CCuGAAGGCGU--UCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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