Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5226 | 5' | -66 | NC_001798.1 | + | 25272 | 0.71 | 0.229538 |
Target: 5'- cCGCCaGCCgccggGGCCCAGCCacacgCCgGCGCc -3' miRNA: 3'- -GCGGcCGG-----UCGGGUCGGa----GGaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 100874 | 0.71 | 0.234845 |
Target: 5'- gGCCGGCCuGGUCgCGGCCUUCUuCGCc -3' miRNA: 3'- gCGGCCGG-UCGG-GUCGGAGGAcGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 71248 | 0.71 | 0.240255 |
Target: 5'- cCGCCGG--GGCCCAGCaacggCUCCUcGCGCu -3' miRNA: 3'- -GCGGCCggUCGGGUCG-----GAGGA-CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 98788 | 0.71 | 0.240255 |
Target: 5'- cCGCCGGCCAcgCCAGCUgcgcgcgcaCCUGCGgGa -3' miRNA: 3'- -GCGGCCGGUcgGGUCGGa--------GGACGCgC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 2367 | 0.7 | 0.250821 |
Target: 5'- aGCuCGGCCAcgGCCCgcggggcgcaguaGGCCUCCaGgGCGg -3' miRNA: 3'- gCG-GCCGGU--CGGG-------------UCGGAGGaCgCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 71082 | 0.7 | 0.251387 |
Target: 5'- aGCCGcGUCAGCCCgcGGUCggCgUGCGCGc -3' miRNA: 3'- gCGGC-CGGUCGGG--UCGGa-GgACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 112641 | 0.7 | 0.251387 |
Target: 5'- aCGCaCGGCCGGCCUuuuaaGGacaaCUCCggGCGCa -3' miRNA: 3'- -GCG-GCCGGUCGGG-----UCg---GAGGa-CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 62279 | 0.7 | 0.26294 |
Target: 5'- cCGCCGGgCGGCCCGGCggga-GCGCGc -3' miRNA: 3'- -GCGGCCgGUCGGGUCGgaggaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 2445 | 0.7 | 0.26294 |
Target: 5'- gGCUGG-CGGCgCCAGCCgcCCUGCGgGu -3' miRNA: 3'- gCGGCCgGUCG-GGUCGGa-GGACGCgC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 80788 | 0.7 | 0.26294 |
Target: 5'- gCGCCccGGCgGGCCgGacGCCgcCCUGCGCGa -3' miRNA: 3'- -GCGG--CCGgUCGGgU--CGGa-GGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 135529 | 0.7 | 0.26294 |
Target: 5'- aCGCCcGCCGGgCCCucgaGGCgUCCgUGCGCGc -3' miRNA: 3'- -GCGGcCGGUC-GGG----UCGgAGG-ACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 24586 | 0.7 | 0.267085 |
Target: 5'- gGCgGGCCGcguggccguggaguGCCUGGCCgCCUGcCGCGg -3' miRNA: 3'- gCGgCCGGU--------------CGGGUCGGaGGAC-GCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 146755 | 0.7 | 0.268877 |
Target: 5'- cCGCCGGagAGCCCgAGCCccgCCcGCGUGu -3' miRNA: 3'- -GCGGCCggUCGGG-UCGGa--GGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 128151 | 0.7 | 0.268877 |
Target: 5'- gCGCCa-CCuGCgCGGCCUgCUGCGCGg -3' miRNA: 3'- -GCGGccGGuCGgGUCGGAgGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 3122 | 0.7 | 0.268877 |
Target: 5'- --aCGGCCacgcGGCCC-GCCUCC-GCGCGc -3' miRNA: 3'- gcgGCCGG----UCGGGuCGGAGGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 26344 | 0.7 | 0.274922 |
Target: 5'- aCGCCGuGCgcggCGGCCCGGCggagCUGCGCGg -3' miRNA: 3'- -GCGGC-CG----GUCGGGUCGgag-GACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 28998 | 0.7 | 0.274922 |
Target: 5'- gCGCCGGCCAaCCgCGcGCCgCC-GCGCGg -3' miRNA: 3'- -GCGGCCGGUcGG-GU-CGGaGGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 121436 | 0.7 | 0.274922 |
Target: 5'- -cCCGGCgCA-CCCGGaCCUCCUGcCGCGc -3' miRNA: 3'- gcGGCCG-GUcGGGUC-GGAGGAC-GCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 43066 | 0.7 | 0.281074 |
Target: 5'- cCGCCGGCCGagcGCgCCGGgCUCggGCGCc -3' miRNA: 3'- -GCGGCCGGU---CG-GGUCgGAGgaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 76026 | 0.7 | 0.281074 |
Target: 5'- cCGCCcGCCcugGGCCCcgaGGCCaUCCagGCGCGg -3' miRNA: 3'- -GCGGcCGG---UCGGG---UCGG-AGGa-CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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