miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 153009 0.73 0.226665
Target:  5'- gGGCGGUCgccggggcggAGUCCgggCCCGCGCGgCGGc -3'
miRNA:   3'- -CUGCCAG----------UCGGGa--GGGCGCGCgGCCc -5'
5230 5' -64.9 NC_001798.1 + 95595 0.72 0.237191
Target:  5'- -cUGGUCAGCCagcUCgGCGcCGCCGGGg -3'
miRNA:   3'- cuGCCAGUCGGga-GGgCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 90401 0.72 0.242059
Target:  5'- cGCGGUUGGgCCggcgcguUCCCGCG-GCCGGGc -3'
miRNA:   3'- cUGCCAGUCgGG-------AGGGCGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 27527 0.72 0.242606
Target:  5'- cGCGGgaaggCAGCCC-CgCgGCGCGCgGGGg -3'
miRNA:   3'- cUGCCa----GUCGGGaG-GgCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 39826 0.72 0.253744
Target:  5'- uGGCGGaucgUCGGCuCCcCgCCGCGCuGCCGGGc -3'
miRNA:   3'- -CUGCC----AGUCG-GGaG-GGCGCG-CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 149976 0.72 0.259469
Target:  5'- cGACGGg-GGCgCggcgCCCGCGgaCGCCGGGg -3'
miRNA:   3'- -CUGCCagUCGgGa---GGGCGC--GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 41927 0.71 0.265299
Target:  5'- aACGGacaCGGCCUgauauUCCCGCGCGUgcuCGGGa -3'
miRNA:   3'- cUGCCa--GUCGGG-----AGGGCGCGCG---GCCC- -5'
5230 5' -64.9 NC_001798.1 + 34797 0.71 0.26766
Target:  5'- -cCGGcgCGGCCCggggccccggggccCCCGCGCuccGCCGGGg -3'
miRNA:   3'- cuGCCa-GUCGGGa-------------GGGCGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 1728 0.71 0.277276
Target:  5'- cACGGUgCGGCgCaggUCCCGCGCcGCCGGc -3'
miRNA:   3'- cUGCCA-GUCGgG---AGGGCGCG-CGGCCc -5'
5230 5' -64.9 NC_001798.1 + 66821 0.71 0.277276
Target:  5'- cGCGGagccCGGCCCggugCCgGCGCccagGCCGGGg -3'
miRNA:   3'- cUGCCa---GUCGGGa---GGgCGCG----CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 91514 0.71 0.289682
Target:  5'- cGGCGGaCccgcgcccgGGuCCCUUCUGCGCGuCCGGGg -3'
miRNA:   3'- -CUGCCaG---------UC-GGGAGGGCGCGC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 2448 0.71 0.289682
Target:  5'- uGGCGGcgcCAGCCgC-CCUGCGgGUCGGGg -3'
miRNA:   3'- -CUGCCa--GUCGG-GaGGGCGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150252 0.71 0.295404
Target:  5'- cGCGccCGGCCCUCCCgacccgcGCGCGUCGGu -3'
miRNA:   3'- cUGCcaGUCGGGAGGG-------CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 43055 0.71 0.302518
Target:  5'- cGGCGcGUgAGCCgCcggCCgaGCGCGCCGGGc -3'
miRNA:   3'- -CUGC-CAgUCGG-Ga--GGg-CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 153225 0.7 0.318494
Target:  5'- cGACGGcCcgGGCCCgcggcggcggaggaCCCGCGCGCCGc- -3'
miRNA:   3'- -CUGCCaG--UCGGGa-------------GGGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 25458 0.7 0.320535
Target:  5'- cGGCGGcgcgcccgccgccuUCGGCCCg-CUGCGCGCCucGGGc -3'
miRNA:   3'- -CUGCC--------------AGUCGGGagGGCGCGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 79966 0.7 0.329492
Target:  5'- aGCGG-CGGCgCCgcgUCCGC-CGCCGGGc -3'
miRNA:   3'- cUGCCaGUCG-GGa--GGGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 51456 0.7 0.336507
Target:  5'- cGACGGUCgAGaUUCUCgcgggCCGCGUGUCGGGc -3'
miRNA:   3'- -CUGCCAG-UC-GGGAG-----GGCGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 28356 0.7 0.343631
Target:  5'- cGGCGG-CGGCCC-CCCGCGUccccGcCCGcGGa -3'
miRNA:   3'- -CUGCCaGUCGGGaGGGCGCG----C-GGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 92931 0.7 0.343631
Target:  5'- aGGCGGUCgucgGGCCCgccgccguggcCCUGCGUGCCcGGa -3'
miRNA:   3'- -CUGCCAG----UCGGGa----------GGGCGCGCGGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.