miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 154489 0.74 0.171562
Target:  5'- cGCGGgcgCcGCCCcucccCCCGCGCGCCGcGGg -3'
miRNA:   3'- cUGCCa--GuCGGGa----GGGCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 154170 0.68 0.412513
Target:  5'- cGGCGua-GGCCCggagCCggaGCGCGUCGGGg -3'
miRNA:   3'- -CUGCcagUCGGGa---GGg--CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 153637 0.66 0.51636
Target:  5'- aGGgGGUCGGaggggaggcguaCCUUCCCGCGCGgcgcguCCGcGGg -3'
miRNA:   3'- -CUgCCAGUC------------GGGAGGGCGCGC------GGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 153403 0.81 0.061271
Target:  5'- cGCGGUCGGCCCgCUCGCGCGCCcaGGa -3'
miRNA:   3'- cUGCCAGUCGGGaGGGCGCGCGGc-CC- -5'
5230 5' -64.9 NC_001798.1 + 153225 0.7 0.318494
Target:  5'- cGACGGcCcgGGCCCgcggcggcggaggaCCCGCGCGCCGc- -3'
miRNA:   3'- -CUGCCaG--UCGGGa-------------GGGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 153009 0.73 0.226665
Target:  5'- gGGCGGUCgccggggcggAGUCCgggCCCGCGCGgCGGc -3'
miRNA:   3'- -CUGCCAG----------UCGGGa--GGGCGCGCgGCCc -5'
5230 5' -64.9 NC_001798.1 + 152255 0.69 0.365647
Target:  5'- --gGGUCcGCCCgggagCUCGUGCcggGCCGGGg -3'
miRNA:   3'- cugCCAGuCGGGa----GGGCGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 152200 0.74 0.175655
Target:  5'- cGGgGGUC-GCCCUCUCacCGUGCCGGGg -3'
miRNA:   3'- -CUgCCAGuCGGGAGGGc-GCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 152053 0.68 0.403645
Target:  5'- gGGCGGcgcaCGGCCCacgggggUCCCccgaccgcuuaaGCGgGCCGGGg -3'
miRNA:   3'- -CUGCCa---GUCGGG-------AGGG------------CGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 151281 0.67 0.471626
Target:  5'- cACGGccgccUCGG-CCUCCaCGCGgGuCCGGGg -3'
miRNA:   3'- cUGCC-----AGUCgGGAGG-GCGCgC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150886 0.69 0.380855
Target:  5'- --gGGUC-GCCCccgcaccgccgCCCcCGCGCCGGGg -3'
miRNA:   3'- cugCCAGuCGGGa----------GGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150678 0.68 0.437296
Target:  5'- cGCGGcgUCuucGCCCaCCCGCGCGCCu-- -3'
miRNA:   3'- cUGCC--AGu--CGGGaGGGCGCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 150319 0.67 0.489295
Target:  5'- -uCGGUCugAGCCUgggUCauGCGCGaCCGGGg -3'
miRNA:   3'- cuGCCAG--UCGGG---AGggCGCGC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150252 0.71 0.295404
Target:  5'- cGCGccCGGCCCUCCCgacccgcGCGCGUCGGu -3'
miRNA:   3'- cUGCcaGUCGGGAGGG-------CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 150138 0.66 0.544007
Target:  5'- cGCGG--GGCCCgaguccgaCCCGCGCcucuuCCGGGg -3'
miRNA:   3'- cUGCCagUCGGGa-------GGGCGCGc----GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 149976 0.72 0.259469
Target:  5'- cGACGGg-GGCgCggcgCCCGCGgaCGCCGGGg -3'
miRNA:   3'- -CUGCCagUCGgGa---GGGCGC--GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 147206 0.73 0.202074
Target:  5'- cGGCGGUcCGGCCCgggccCCCGgcggaGCGCgGGGg -3'
miRNA:   3'- -CUGCCA-GUCGGGa----GGGCg----CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 147165 0.69 0.388616
Target:  5'- -cCGGgUAGCCg-CCCG-GCGCCGGGc -3'
miRNA:   3'- cuGCCaGUCGGgaGGGCgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 146991 0.66 0.561765
Target:  5'- cGAgGGUCcGCCuCUugccucggggaccCCCggGCGgGCCGGGg -3'
miRNA:   3'- -CUgCCAGuCGG-GA-------------GGG--CGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 143956 0.68 0.404446
Target:  5'- aGGCaGccgCGGCCgCUCaugCGCGCGUCGGGg -3'
miRNA:   3'- -CUGcCa--GUCGG-GAGg--GCGCGCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.