miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 5' -63.1 NC_001798.1 + 154535 0.71 0.307807
Target:  5'- ---cGGGCGCCCCCGCG----CGGCUu -3'
miRNA:   3'- ccauCCCGCGGGGGCGUcuagGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 150877 0.67 0.528589
Target:  5'- aGGUuccgcGGGuCGCCCCCGCAccgccgcccccGcgCCGGg- -3'
miRNA:   3'- -CCAu----CCC-GCGGGGGCGU-----------CuaGGCCga -5'
5232 5' -63.1 NC_001798.1 + 149980 0.69 0.438457
Target:  5'- --gGGGGCGCggcgCCCGCGGAcgCCGGg- -3'
miRNA:   3'- ccaUCCCGCGg---GGGCGUCUa-GGCCga -5'
5232 5' -63.1 NC_001798.1 + 149160 0.68 0.473523
Target:  5'- ---cGaGGCGCCUcggCCGguGGUCCGGUg -3'
miRNA:   3'- ccauC-CCGCGGG---GGCguCUAGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 147184 0.71 0.32152
Target:  5'- cGGgcGgaaGGCGuCCCCCGCccggcGGUCCGGCc -3'
miRNA:   3'- -CCauC---CCGC-GGGGGCGu----CUAGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 147060 0.7 0.373057
Target:  5'- cGG-AGGG-GCCCCCGCAccucGGcggccgcccccUCCGGCg -3'
miRNA:   3'- -CCaUCCCgCGGGGGCGU----CU-----------AGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 146721 0.67 0.528589
Target:  5'- cGGUugcGGGCGCCgugCCCGgAGAUCCa--- -3'
miRNA:   3'- -CCAu--CCCGCGG---GGGCgUCUAGGccga -5'
5232 5' -63.1 NC_001798.1 + 146635 0.68 0.500723
Target:  5'- -------gGCCCCCGCGGGcaUCCGGCg -3'
miRNA:   3'- ccaucccgCGGGGGCGUCU--AGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 143295 0.74 0.219088
Target:  5'- cGUAGGGgccgucCGCCCCCgGCGGGUcgCCGGCc -3'
miRNA:   3'- cCAUCCC------GCGGGGG-CGUCUA--GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 138731 0.69 0.413157
Target:  5'- cGGgccGGCGCgCUCCGCGGccCCGGCg -3'
miRNA:   3'- -CCaucCCGCG-GGGGCGUCuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 138166 0.7 0.36536
Target:  5'- gGGUccugGGGGCGCgaCCCGCGG--CCGGUg -3'
miRNA:   3'- -CCA----UCCCGCGg-GGGCGUCuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 136017 0.69 0.404926
Target:  5'- cGGUc-GGCGUCCCCGUGGAUCuguacccgCGGCc -3'
miRNA:   3'- -CCAucCCGCGGGGGCGUCUAG--------GCCGa -5'
5232 5' -63.1 NC_001798.1 + 135283 0.67 0.551286
Target:  5'- uGGUGGcGGcCGCCCCCuCGGAgcccugggcccgggCCGuGCUg -3'
miRNA:   3'- -CCAUC-CC-GCGGGGGcGUCUa-------------GGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 135001 0.76 0.168731
Target:  5'- cGGUGGGcGCcagggucguccuGCCCCCGCGGGcauggCCGGCc -3'
miRNA:   3'- -CCAUCC-CG------------CGGGGGCGUCUa----GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 134612 0.75 0.181336
Target:  5'- aGG-AGGGCGCCUUCGCGGAcCUGGUc -3'
miRNA:   3'- -CCaUCCCGCGGGGGCGUCUaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 132160 0.67 0.557008
Target:  5'- gGGcGGGGCGCCCCCccCGGAcgcccccCCGGaCg -3'
miRNA:   3'- -CCaUCCCGCGGGGGc-GUCUa------GGCC-Ga -5'
5232 5' -63.1 NC_001798.1 + 128843 0.7 0.396798
Target:  5'- ----cGGCGCCCCCGCGGccUCCGcGUa -3'
miRNA:   3'- ccaucCCGCGGGGGCGUCu-AGGC-CGa -5'
5232 5' -63.1 NC_001798.1 + 128443 0.68 0.491577
Target:  5'- cGGUGGGGCGCgCa---GGGUCCGuGCUu -3'
miRNA:   3'- -CCAUCCCGCGgGggcgUCUAGGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 122364 0.71 0.305789
Target:  5'- cGUGGGGCGggcgacgcgcccgcCCCCCGCGGcuguccUCCGaGCUg -3'
miRNA:   3'- cCAUCCCGC--------------GGGGGCGUCu-----AGGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 121408 0.7 0.373057
Target:  5'- cGGUGGGGgcgauccuaGCCCCCGUcaucCCGGCg -3'
miRNA:   3'- -CCAUCCCg--------CGGGGGCGucuaGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.