miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 33404 0.66 0.907053
Target:  5'- gGAGGGCGC-CUGGCuCGGgGAgggaggaggggggggGUCAgCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCG-GCUgCU---------------UAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 151218 0.66 0.904596
Target:  5'- cAGGGA-GCGCgGgGCCGuccGCGggUUGCCc -3'
miRNA:   3'- -UUCCUgCGUGgC-CGGC---UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 102498 0.66 0.904596
Target:  5'- cGGGGACGgGCCGgcGCCGGgGuGUCcguagGCCa -3'
miRNA:   3'- -UUCCUGCgUGGC--CGGCUgCuUAG-----UGG- -5'
5234 3' -56.6 NC_001798.1 + 52523 0.66 0.904596
Target:  5'- -cGGccgcGCGCGCCGuGCUGGCGAcggggcUCAUCc -3'
miRNA:   3'- uuCC----UGCGUGGC-CGGCUGCUu-----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 22340 0.66 0.904596
Target:  5'- -cGGACGCGCgGGCgucggGGCGGG--GCCg -3'
miRNA:   3'- uuCCUGCGUGgCCGg----CUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 92320 0.66 0.904596
Target:  5'- -cGGcGCGCAgCGG-CGACGcggacGUCGCCg -3'
miRNA:   3'- uuCC-UGCGUgGCCgGCUGCu----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 85041 0.66 0.904596
Target:  5'- gGGGGugccgucgaGCGcCGCCGuGCgCGAaGAGUCGCCg -3'
miRNA:   3'- -UUCC---------UGC-GUGGC-CG-GCUgCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23667 0.66 0.903976
Target:  5'- cGGGcccGCGCggcggugGCCGGCCG-CGA--CGCCa -3'
miRNA:   3'- uUCC---UGCG-------UGGCCGGCuGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 132131 0.66 0.903976
Target:  5'- cAGGcggcccuGCGCcgccggggGCCGGCgGGCGGggCGCCc -3'
miRNA:   3'- uUCC-------UGCG--------UGGCCGgCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 138271 0.66 0.898295
Target:  5'- uAGGcGCGUACCGuGUCGuuGAuGUCGCCc -3'
miRNA:   3'- uUCC-UGCGUGGC-CGGCugCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 36333 0.66 0.898295
Target:  5'- cGGGGCuCGCUGGuCCGcCGAaguaaagaaaagAUCGCCa -3'
miRNA:   3'- uUCCUGcGUGGCC-GGCuGCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 122237 0.66 0.898295
Target:  5'- uGGGAaGCuCUGGCCGGCGGcg-ACCg -3'
miRNA:   3'- uUCCUgCGuGGCCGGCUGCUuagUGG- -5'
5234 3' -56.6 NC_001798.1 + 6364 0.66 0.898295
Target:  5'- gGGGGACGgGCCggggGGCCGGggggcCGGGggGCCg -3'
miRNA:   3'- -UUCCUGCgUGG----CCGGCU-----GCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 37990 0.66 0.898295
Target:  5'- gGGGGAUGCACCGGa-GACGu----CCu -3'
miRNA:   3'- -UUCCUGCGUGGCCggCUGCuuaguGG- -5'
5234 3' -56.6 NC_001798.1 + 54560 0.66 0.898295
Target:  5'- cGGGGucccgagcccUGCGCCGGCCGGCcGGcCACg -3'
miRNA:   3'- uUCCU----------GCGUGGCCGGCUGcUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 97212 0.66 0.898295
Target:  5'- cAGGAgaccgcCGCGgUGGCCGugGAGcuggCGCUg -3'
miRNA:   3'- uUCCU------GCGUgGCCGGCugCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 111137 0.66 0.898295
Target:  5'- cAGGGCgGCGCuguCGGCCcGCGcGUCGCUc -3'
miRNA:   3'- uUCCUG-CGUG---GCCGGcUGCuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23897 0.66 0.898295
Target:  5'- gGAGGAgGCGCgGGCCcgguuCGAGgccucgggCGCCc -3'
miRNA:   3'- -UUCCUgCGUGgCCGGcu---GCUUa-------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 128867 0.66 0.898295
Target:  5'- cGAGGAC-CugaUGGCgCGGCGA-UCGCCg -3'
miRNA:   3'- -UUCCUGcGug-GCCG-GCUGCUuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 49037 0.66 0.898295
Target:  5'- ---uACGcCACCGGUCGGCuGAGUCAggcCCa -3'
miRNA:   3'- uuccUGC-GUGGCCGGCUG-CUUAGU---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.