Results 41 - 60 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5234 | 3' | -56.6 | NC_001798.1 | + | 2506 | 0.71 | 0.611334 |
Target: 5'- cGGGGCGCGgCGGCCGcgGCGGcggcGUCGgCg -3' miRNA: 3'- uUCCUGCGUgGCCGGC--UGCU----UAGUgG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 149293 | 0.71 | 0.621478 |
Target: 5'- cGGGugGCGCgaccggaGGCCGugGAAguccagcgCGCCc -3' miRNA: 3'- uUCCugCGUGg------CCGGCugCUUa-------GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 150448 | 0.71 | 0.621478 |
Target: 5'- -cGGACGCGCgGGgCGACGGccgCGCg -3' miRNA: 3'- uuCCUGCGUGgCCgGCUGCUua-GUGg -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 3273 | 0.71 | 0.631629 |
Target: 5'- cGGGcaccGCGCGCucguCGGCCGGCGAcgcCGCCg -3' miRNA: 3'- uUCC----UGCGUG----GCCGGCUGCUua-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 47059 | 0.71 | 0.651927 |
Target: 5'- cGGGGACGCGCaauGCCGggGCGAcagCGCCg -3' miRNA: 3'- -UUCCUGCGUGgc-CGGC--UGCUua-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 98541 | 0.71 | 0.662056 |
Target: 5'- gGGGGcuugauuuGCGCGCUGGUCGugGGggCGCUg -3' miRNA: 3'- -UUCC--------UGCGUGGCCGGCugCUuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 31570 | 0.71 | 0.662056 |
Target: 5'- cGGGGCGCGCCGcgcGCCcccgcGCGGccGUCGCCc -3' miRNA: 3'- uUCCUGCGUGGC---CGGc----UGCU--UAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 39551 | 0.71 | 0.662056 |
Target: 5'- uGGGugGCGCCggGGCCGucCGuccgCGCCg -3' miRNA: 3'- uUCCugCGUGG--CCGGCu-GCuua-GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 3142 | 0.7 | 0.672161 |
Target: 5'- ---cGCGCGCCGGCCGcCGc--CACCa -3' miRNA: 3'- uuccUGCGUGGCCGGCuGCuuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 153175 | 0.7 | 0.672161 |
Target: 5'- cGGGGCucCGCCGGCCGAgGccgcccUCGCCg -3' miRNA: 3'- uUCCUGc-GUGGCCGGCUgCuu----AGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 143297 | 0.7 | 0.672161 |
Target: 5'- uAGGGGC-CGuCCGcccCCGGCGggUCGCCg -3' miRNA: 3'- -UUCCUGcGU-GGCc--GGCUGCuuAGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 91079 | 0.7 | 0.672161 |
Target: 5'- uAGGGGCGCGCCGGa-GGCGGccGUCguggACCc -3' miRNA: 3'- -UUCCUGCGUGGCCggCUGCU--UAG----UGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 109915 | 0.7 | 0.682235 |
Target: 5'- -uGGACGCGCUGGCC-AUGGc-CACCc -3' miRNA: 3'- uuCCUGCGUGGCCGGcUGCUuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 71647 | 0.7 | 0.682235 |
Target: 5'- -uGGGCcCgGCCGuGCCGACGGAaCACCu -3' miRNA: 3'- uuCCUGcG-UGGC-CGGCUGCUUaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 90395 | 0.7 | 0.682235 |
Target: 5'- gGGGGGCGCGguUgGGCCGGCGcGUUcCCg -3' miRNA: 3'- -UUCCUGCGU--GgCCGGCUGCuUAGuGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 109700 | 0.7 | 0.682235 |
Target: 5'- -cGGGCGCGCCcucGGCCGagcaGCGGGaacgCGCCc -3' miRNA: 3'- uuCCUGCGUGG---CCGGC----UGCUUa---GUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 2473 | 0.7 | 0.692268 |
Target: 5'- cGGGGCcCucgGCgGGCCGGCGggUCAgCg -3' miRNA: 3'- uUCCUGcG---UGgCCGGCUGCuuAGUgG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 32880 | 0.7 | 0.692268 |
Target: 5'- -cGGAC-CACCGGCCGAgG---CGCCu -3' miRNA: 3'- uuCCUGcGUGGCCGGCUgCuuaGUGG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 52491 | 0.7 | 0.692268 |
Target: 5'- cGGGGACGCgcGCCGGCgcaggGACGAcgCGgCg -3' miRNA: 3'- -UUCCUGCG--UGGCCGg----CUGCUuaGUgG- -5' |
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5234 | 3' | -56.6 | NC_001798.1 | + | 88754 | 0.7 | 0.692268 |
Target: 5'- cGGGGGCGCgcauGCCGGCCGccucCGGaaaGUCgGCCa -3' miRNA: 3'- -UUCCUGCG----UGGCCGGCu---GCU---UAG-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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