miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5239 3' -60.6 NC_001798.1 + 108448 0.66 0.739366
Target:  5'- gCUCGGCCGGCcUCGGAacgCgAGccuGCCCGa -3'
miRNA:   3'- -GAGCCGGCUGaGGUCUa--GgUC---CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 24570 0.66 0.739366
Target:  5'- -gCGGCCGGCgCgCGGAggCGGGCCg- -3'
miRNA:   3'- gaGCCGGCUGaG-GUCUagGUCCGGgu -5'
5239 3' -60.6 NC_001798.1 + 24075 0.66 0.739366
Target:  5'- --aGGCCuGCuUCCGGAUCuCGGGCgCGg -3'
miRNA:   3'- gagCCGGcUG-AGGUCUAG-GUCCGgGU- -5'
5239 3' -60.6 NC_001798.1 + 153370 0.66 0.71932
Target:  5'- cCUCGGCCGccgccacGCggcgCCGGAaCCGgucgcggucGGCCCGc -3'
miRNA:   3'- -GAGCCGGC-------UGa---GGUCUaGGU---------CCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 151607 0.66 0.704808
Target:  5'- gCUCGGCCGggggccgggccggggGCguggCCGcGUCCaucAGGCCCGc -3'
miRNA:   3'- -GAGCCGGC---------------UGa---GGUcUAGG---UCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 69857 0.66 0.695058
Target:  5'- gUCGGCCGcccccccccacacacACUCCcacccgacAGcacCCGGGCCCGa -3'
miRNA:   3'- gAGCCGGC---------------UGAGG--------UCua-GGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 100121 0.66 0.691144
Target:  5'- -aCGaGCUGACUCUcuGGAaCgAGGCCCGc -3'
miRNA:   3'- gaGC-CGGCUGAGG--UCUaGgUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 77408 0.66 0.691144
Target:  5'- -gCGGCCGccgaccugguAgUCCAGGcgcgCCGGGCCUg -3'
miRNA:   3'- gaGCCGGC----------UgAGGUCUa---GGUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 3512 0.66 0.681328
Target:  5'- -gCGGCCGcCaCguGcgCCAGGCCCc -3'
miRNA:   3'- gaGCCGGCuGaGguCuaGGUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 80328 0.66 0.681328
Target:  5'- gCUCGGCCuuggagcucggGAC-CCAGcgCCGGGacguCCCGg -3'
miRNA:   3'- -GAGCCGG-----------CUGaGGUCuaGGUCC----GGGU- -5'
5239 3' -60.6 NC_001798.1 + 92648 0.66 0.681328
Target:  5'- gCUCGGaCUgGAC-CCGGA-CCGGGCCUu -3'
miRNA:   3'- -GAGCC-GG-CUGaGGUCUaGGUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 34797 0.66 0.681328
Target:  5'- -cCGGCgCGGC-CCGGggCCccgGGGCCCc -3'
miRNA:   3'- gaGCCG-GCUGaGGUCuaGG---UCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 89424 0.66 0.681328
Target:  5'- -aCGGCCGGgcgcuugggcgcCUCCuuGUCgAGGCCCc -3'
miRNA:   3'- gaGCCGGCU------------GAGGucUAGgUCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 18790 0.67 0.671474
Target:  5'- uUCGGCaaug-CCGGAUCCuGGCCUc -3'
miRNA:   3'- gAGCCGgcugaGGUCUAGGuCCGGGu -5'
5239 3' -60.6 NC_001798.1 + 72143 0.67 0.66159
Target:  5'- -cCGGCC-ACccgggCCGGcgUCGGGCCCAc -3'
miRNA:   3'- gaGCCGGcUGa----GGUCuaGGUCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 96987 0.67 0.66159
Target:  5'- -gCGGgCGGCggggCCAGggCC-GGCCCGc -3'
miRNA:   3'- gaGCCgGCUGa---GGUCuaGGuCCGGGU- -5'
5239 3' -60.6 NC_001798.1 + 24668 0.67 0.651683
Target:  5'- -gCGGCCGug-CCGGGgcuggCCGGaGCCCGg -3'
miRNA:   3'- gaGCCGGCugaGGUCUa----GGUC-CGGGU- -5'
5239 3' -60.6 NC_001798.1 + 64704 0.67 0.651683
Target:  5'- cCUC-GCUGACgUCCgAGAUCUGGGCCgAg -3'
miRNA:   3'- -GAGcCGGCUG-AGG-UCUAGGUCCGGgU- -5'
5239 3' -60.6 NC_001798.1 + 84105 0.67 0.651683
Target:  5'- aUCGGCCgGGCgUCCAGG-CCgAGGCgCCc -3'
miRNA:   3'- gAGCCGG-CUG-AGGUCUaGG-UCCG-GGu -5'
5239 3' -60.6 NC_001798.1 + 55937 0.67 0.651683
Target:  5'- aUCGcuCCGACgCC-GAUCCAGGCCaCGg -3'
miRNA:   3'- gAGCc-GGCUGaGGuCUAGGUCCGG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.