miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 97573 0.74 0.408467
Target:  5'- --aGGACGGGGAGcGCGGccccgaGCCAGGGg- -3'
miRNA:   3'- gcaCCUGCUCUUC-CGCC------UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 36305 0.73 0.425552
Target:  5'- gGUGuGGCGGcGggGcGCGGGCCGGGGc- -3'
miRNA:   3'- gCAC-CUGCU-CuuC-CGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 48701 0.73 0.442172
Target:  5'- gGUGGggaagucACGAGGuuugGGGCGGcACUGGGGUGa -3'
miRNA:   3'- gCACC-------UGCUCU----UCCGCC-UGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 4397 0.72 0.479237
Target:  5'- gGUGGugGuGucGGCGGggcGCCGGGGg- -3'
miRNA:   3'- gCACCugCuCuuCCGCC---UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 36419 0.72 0.479237
Target:  5'- --cGGGCGGGgcGGUGGGgCGGGGUc -3'
miRNA:   3'- gcaCCUGCUCuuCCGCCUgGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 38283 0.72 0.488508
Target:  5'- aCGUGGcauucagacaguACGGGggGGC-GACguGGGUGa -3'
miRNA:   3'- -GCACC------------UGCUCuuCCGcCUGguCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 61023 0.72 0.488508
Target:  5'- --cGGAUGGGGguuAGGgGGGCCGGGGg- -3'
miRNA:   3'- gcaCCUGCUCU---UCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 19063 0.72 0.507296
Target:  5'- gGUGGuCGGGgcGGCGGACCuGuGUGu -3'
miRNA:   3'- gCACCuGCUCuuCCGCCUGGuCcCAC- -5'
5241 3' -58.4 NC_001798.1 + 85280 0.72 0.507296
Target:  5'- --aGGcuuCGGGggGGCGGggGCCGGGGUc -3'
miRNA:   3'- gcaCCu--GCUCuuCCGCC--UGGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 137474 0.71 0.536031
Target:  5'- gCGggGGuuGGGGAGGgGGGCCGGGGc- -3'
miRNA:   3'- -GCa-CCugCUCUUCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 64512 0.71 0.536031
Target:  5'- gGUGGGCGGGGuccaggcaAGGCaGGGCCuGGGc- -3'
miRNA:   3'- gCACCUGCUCU--------UCCG-CCUGGuCCCac -5'
5241 3' -58.4 NC_001798.1 + 36144 0.71 0.5555
Target:  5'- cCGgugGGGCGcGgcGGCGG-UCGGGGUGg -3'
miRNA:   3'- -GCa--CCUGCuCuuCCGCCuGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 56174 0.71 0.5555
Target:  5'- cCGggGGACGgcgGGggGGUGGGgUGGGGUGu -3'
miRNA:   3'- -GCa-CCUGC---UCuuCCGCCUgGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 108839 0.71 0.565313
Target:  5'- cCGUGGGCGucuGGAcgacGGGCGGGCUGgcguucGGGUGc -3'
miRNA:   3'- -GCACCUGC---UCU----UCCGCCUGGU------CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 145818 0.71 0.565313
Target:  5'- aCGcGGGCGcGgcGGCGG-UCGGGGUGg -3'
miRNA:   3'- -GCaCCUGCuCuuCCGCCuGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 6414 0.71 0.57517
Target:  5'- aCGgggGGACGGGGggacGGGgGGACgGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCU----UCCgCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6478 0.71 0.57517
Target:  5'- aCGgggGGACGGGGggacGGGgGGACgGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCU----UCCgCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 146088 0.71 0.57517
Target:  5'- cCG-GGGCGAGGcGGGCGGGCgAaggaaggggGGGUGg -3'
miRNA:   3'- -GCaCCUGCUCU-UCCGCCUGgU---------CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 6446 0.71 0.57517
Target:  5'- aCGgggGGACGGGGggacGGGgGGACgGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCU----UCCgCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 51334 0.7 0.594994
Target:  5'- --gGGGCGGGuGGGCGGuuCGcGGGUGg -3'
miRNA:   3'- gcaCCUGCUCuUCCGCCugGU-CCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.