miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5247 5' -59.3 NC_001798.1 + 128241 0.66 0.763248
Target:  5'- cGUgUCGCUGG-AGGCggccggcaugguggaCCGCGGgCUCg -3'
miRNA:   3'- -CAgAGCGACCgUUCGa--------------GGUGCCgGAG- -5'
5247 5' -59.3 NC_001798.1 + 35590 0.66 0.752832
Target:  5'- -gCUCgGCUGcggccGCGGGCUCCGgGGgCUCc -3'
miRNA:   3'- caGAG-CGAC-----CGUUCGAGGUgCCgGAG- -5'
5247 5' -59.3 NC_001798.1 + 9692 0.66 0.743253
Target:  5'- cUCUCacgugcggGCgGGUggGCUCgACGGgCUCg -3'
miRNA:   3'- cAGAG--------CGaCCGuuCGAGgUGCCgGAG- -5'
5247 5' -59.3 NC_001798.1 + 140554 0.66 0.733579
Target:  5'- gGUCagCGCguacaUGGcCAAGCUCCAC-GCCUa -3'
miRNA:   3'- -CAGa-GCG-----ACC-GUUCGAGGUGcCGGAg -5'
5247 5' -59.3 NC_001798.1 + 60309 0.66 0.723818
Target:  5'- -gCUCGaacgUGGUggGUUUgGCGGUCUCg -3'
miRNA:   3'- caGAGCg---ACCGuuCGAGgUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 10710 0.66 0.723818
Target:  5'- ---cCGCaGGCAuccaggGGUUCCGCGGCC-Ca -3'
miRNA:   3'- cagaGCGaCCGU------UCGAGGUGCCGGaG- -5'
5247 5' -59.3 NC_001798.1 + 31901 0.67 0.703079
Target:  5'- ---gCGCgGGUcggacucGGGCcCCGCGGCCUCg -3'
miRNA:   3'- cagaGCGaCCG-------UUCGaGGUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 77189 0.67 0.694106
Target:  5'- --gUCGCgacGGCAAGUcCCGCGGCgaCg -3'
miRNA:   3'- cagAGCGa--CCGUUCGaGGUGCCGgaG- -5'
5247 5' -59.3 NC_001798.1 + 80893 0.67 0.694106
Target:  5'- uGUCUgGC-GGCGcAGCUCC-CGcGCCUg -3'
miRNA:   3'- -CAGAgCGaCCGU-UCGAGGuGC-CGGAg -5'
5247 5' -59.3 NC_001798.1 + 112412 0.67 0.684089
Target:  5'- ---gUGgUGGCAuagcugAGCUCCAUGGCCg- -3'
miRNA:   3'- cagaGCgACCGU------UCGAGGUGCCGGag -5'
5247 5' -59.3 NC_001798.1 + 93286 0.67 0.663936
Target:  5'- cGUCggggCGUaccUGGCGcGCgCCGCGGgCCUCg -3'
miRNA:   3'- -CAGa---GCG---ACCGUuCGaGGUGCC-GGAG- -5'
5247 5' -59.3 NC_001798.1 + 105367 0.67 0.663936
Target:  5'- aUgUCGacgGGC-AGCUCgGCGGCCUg -3'
miRNA:   3'- cAgAGCga-CCGuUCGAGgUGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 51871 0.67 0.663936
Target:  5'- -gCUCGaCgacagGGCGgccgAGCUCCACGGCaguUCg -3'
miRNA:   3'- caGAGC-Ga----CCGU----UCGAGGUGCCGg--AG- -5'
5247 5' -59.3 NC_001798.1 + 77801 0.67 0.653818
Target:  5'- ---gCGCUGGCGGGCaCgCACGGCUa- -3'
miRNA:   3'- cagaGCGACCGUUCGaG-GUGCCGGag -5'
5247 5' -59.3 NC_001798.1 + 76444 0.67 0.653818
Target:  5'- ----aGCUGGCGcgcAGCaUCCACGGCaUCa -3'
miRNA:   3'- cagagCGACCGU---UCG-AGGUGCCGgAG- -5'
5247 5' -59.3 NC_001798.1 + 81400 0.68 0.643683
Target:  5'- -cCUCGCaugugGGCcuGGaUCCACGGCCUg -3'
miRNA:   3'- caGAGCGa----CCGu-UCgAGGUGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 96437 0.68 0.633538
Target:  5'- ---aCGCgUGGCGcgagggggagcGGCUCCugGGCCa- -3'
miRNA:   3'- cagaGCG-ACCGU-----------UCGAGGugCCGGag -5'
5247 5' -59.3 NC_001798.1 + 95344 0.68 0.623393
Target:  5'- -aUUCGCUGuGCGagcAGCUCCGgGGCaUCa -3'
miRNA:   3'- caGAGCGAC-CGU---UCGAGGUgCCGgAG- -5'
5247 5' -59.3 NC_001798.1 + 138733 0.68 0.623393
Target:  5'- ----gGCcGGCGcGCUCCGCGGCCcCg -3'
miRNA:   3'- cagagCGaCCGUuCGAGGUGCCGGaG- -5'
5247 5' -59.3 NC_001798.1 + 2786 0.68 0.613254
Target:  5'- -gCUCaGCaGGCGcgGGCUCCGCGGCa-- -3'
miRNA:   3'- caGAG-CGaCCGU--UCGAGGUGCCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.